chr5_39

cmsearch-Rfam

Family :

TB11Cs2H1

Id:

RF01537

Type:

Gene; snRNA; snoRNA; HACA-box;

Taxonomy:

Eukaryota;

Ontology:

GO:0006396 RNA processingRF01537

Description:

not description

Score:

83.1

E-value:

1.2e-17

From sequence:

436576

To sequence:

436646

Alignments:

                                                                                         NC
                 :::<<<<<<------<<<<<<<<<<<________.____>>>>->>>>>>>------->>>>>>::::::: CS
  RF01537      1 aAAGCuCUuauUGUAGUGCgCguGCCgCaAAAcc.aacAGGCaCcGuGCACGAAACUGgAGaGCgAGAuuu 70    
                    GC:CUUA+UGUA:UGCGCGUGCCGCAA ACC +ACAGGCACCGUGCA:GAAACUGGAG:GC+AGAUU 
     chr5 436576 GGUGCGCUUACUGUAGUGCGCGUGCCGCAAGACCcCACAGGCACCGUGCAUGAAACUGGAGCGCUAGAUUG 436646
                 ********************************9999*********************************** PP

RNAfold
>chr5_39
GUGCGCUUACUGUAGUGCGCGUGCCGCAAGACCCCACAGGCACCGUGCAU
GAAACUGGAGCGCUAGAUUG
..((((((......(((((((((((.............)))).))))))).......))))))....... (-26.20)

Length sequence

: 70

Length match:

69