chr5_4

cmsearch-Rfam

Family :

MIR1023

Id:

RF01043

Type:

Gene; miRNA;

Taxonomy:

Eukaryota;

Ontology:

GO:0035068 micro-ribonucleoprotein complexRF01043

Description:

not description

Score:

34.3

E-value:

0.0002

From sequence:

85956

To sequence:

85843

Alignments:

                                                       v      v              v      v                              NC
                :::::::::::::<<<<<<<<<<<<<<<<<-<<<<<<<<<<<-<<<<<<<<~~~~~~>>>>>>>>->>>>>>>>>>>->>>>>>>>>>>>>>>>>::: CS
  RF01043     1 GCGcAGugGACaCAgCuuGCAauUuacuguaCACUCUCUCCgUUUCcCUuC*[65]*GaAGgGAAUcGGAGAGAGUGuacagugAauUGCaaGcUUgA 157  
                GCG A   G C  ::C:: C::: ::CU:U CAC: UC  C:U U  CUU:      :AAG  A  :G  GA :GUG A:AG:: :::G ::G:: G 
     chr5 85956 GCG-AUGCGUCUUCCCCCUCCCCGCGCUCUUCACCGUCGCCCUGUGCCUUC*[15]*AAAGUCACAGGCCGACGGUGAAGAGCGCGGGGAGGGGGAGG 85851
                ***.55555899*************************************97...7..79*************************************** PP

                         NC
                :::::::: CS
  RF01043   158 uuguUuuG 165  
                  +   + 
     chr5 85850 AGAGAGAC 85843
                ******** PP

>>

RNAfold
>chr5_4
CUCCUCUCCCUUUUCCUCACUCCUGGUCUCUCUCCUCCCCCUCCCCGCGC
UCUUCACCGUCGGCCUGUGACUUUGACGAAUACAUGAGAGAAGGCACAGG
GCGACGGUGAAGAGCGCGGGGAGGGGGAAGACGCAUCGCCCUGUGCGCUG
AUGCAUUCGAGCCGC
.......................(((.(((..((.(((((((((((((((((((((((((((.((((((.((((..(..........)..)))))))))).))))))))))))))))))))))))))).)).(((((((.......)).)))))....)))))). (-92.30)

Length sequence

: 165

Length match:

112