chr5_40

cmsearch-Rfam

Family :

TB9Cs3H1

Id:

RF01555

Type:

Gene; snRNA; snoRNA; HACA-box;

Taxonomy:

Eukaryota;

Ontology:

GO:0006396 RNA processingRF01555

Description:

not description

Score:

71.8

E-value:

1e-13

From sequence:

436873

To sequence:

436943

Alignments:

                                           v                 v                           NC
                 :<<<<<<<-------<<<<--<<---<<<____...______>>>->>--->>>>------>>>>>>>::: CS
  RF01555      1 AGCAcgAUUaAACACGGAuccaCcuuggcaUAc...uUuaGUgccgGuGuuaUCCGCCAGUGUcgUGCaAG 68    
                 AG:ACG UUAAACACGGA: C:CC   GCAUAC   +UU+GUGC GG:G +:UCCGCCAGUG CGU:C+AG
     chr5 436873 AGUACGGUUAAACACGGACGCGCCGCUGCAUACgcuCUUGGUGCUGGCGCCGUCCGCCAGUGUCGUACGAG 436943
                 *****************************99999999********************************** PP

>>

RNAfold
>chr5_40
GUACGGUUAAACACGGACGCGCCGCUGCAUACGCUCUUGGUGCUGGCGCC
GUCCGCCAGUGUCGUACGAG
((((((.......(((((((((((..((((.........))))))))).))))))......))))))... (-27.40)

Length sequence

: 70

Length match:

69