chr5_43

cmsearch-Rfam

Family :

TB9Cs3H2

Id:

RF01556

Type:

Gene; snRNA; snoRNA; HACA-box;

Taxonomy:

Eukaryota;

Ontology:

GO:0006396 RNA processingRF01556

Description:

not description

Score:

74.9

E-value:

5.2e-16

From sequence:

437977

To sequence:

438040

Alignments:

                                                                                  NC
                 :<<<<<--------<<<<<<<<----<__.____>---->>>>>>>>-------->>>>>:::: CS
  RF01556      1 AGUGCCcUCAGGUAauGuGguGaUuGugu.uCccaUCagCacCaCagGUUCAAGaGGCACgAGA 63    
                 AGUGCC  CAGGUA::G:G::GAU GUGU  C+CAUC GC::C:C::GUUCAAG GGCACGAGA
     chr5 437977 AGUGCCGCCAGGUAAAGCGGCGAUGGUGUgCCUCAUCCGCGUCGCUUGUUCAAGCGGCACGAGA 438040
                 *****************************9999******************************* PP

RNAfold
>chr5_43
GUGCCGCCAGGUAAAGCGGCGAUGGUGUGCCUCAUCCGCGUCGCUUGUUC
AAGCGGCACGAGA
(((((((..((..((((((((..((((.....))))..))))))))..))..))))))).... (-32.00)

Length sequence

: 63

Length match:

62