chr5_5

cmsearch-Rfam

Family :

MIR1023

Id:

RF01043

Type:

Gene; miRNA;

Taxonomy:

Eukaryota;

Ontology:

GO:0035068 micro-ribonucleoprotein complexRF01043

Description:

not description

Score:

30.6

E-value:

0.0018

From sequence:

257770

To sequence:

257684

Alignments:

                                                                                                            NC
                 <<<<<<<<<<<-<<<<<<<<<<---------------<<<<<<<~~~~~~>>>>>>>----------->>>>>>>>>>->>>>>>>>>>> CS
  RF01043     32 CACUCUCUCCgUUUCcCUuCCcaUaAUGacuaGguUggucgAuc*[21]*gaUcgacGaUcAggAgUugGGaAGgGAAUcGGAGAGAGUG 136   
                 C:CUC:CUC :U::C:C::CCC+ +A G   AGGU G: ::AU:      :AU:: :   +A   G  GGG::G:G:: : GAG:GAG:G
     chr5 257770 CCCUCCCUCUCUCCCUCCCCCCUGCAAGCGAAGGUCGCUUCAUU*[ 8]*GAUGAGG---UAC--GAGGGGGGGAGGGAGGGAGGGAGGG 257684
                 99999999999999999999999999999999998865554443...5..3333333...222..3559999999999999999999999 PP

>>

RNAfold
>chr5_5
CCCUCCCUCCCUCCCCUCCCUCCCUCCCUCCCUCCCCUCCCUCCCUCCCU
CCCUCCCCCCCUCGUACCUCAUCAUGUAAGUAAUGAAGCGACCUUCGCUU
GCAGGGGGGAGGGAGAGAGGGAGGGGUGGCGAUACACAAAAAUAGUGGAU
GACGGAGGAAGACG
..((.(((((.((...(((((...........((((.((((((((((.((((((((((((..............(((((((...((((....))))))))))))))))))))))).)))))))))).)).))...........)).))).)).))))).))... (-75.30)

Length sequence

: 164

Length match:

85