chr5_6

cmsearch-Rfam

Family :

MIR1122

Id:

RF00906

Type:

Gene; miRNA;

Taxonomy:

Eukaryota;

Ontology:

GO:0035068 micro-ribonucleoprotein complexRF00906

Description:

not description

Score:

42.9

E-value:

3.9e-06

From sequence:

160174

To sequence:

160291

Alignments:

                            v v                                                                                   NC
                 ::::<<<<<<<<<<<<<<<<<<<<<<<<<<<<<-----------------<<<<<<<<<<<<___________>>>>>>>>>>>>----------- CS
  RF00906      1 uaaaUACUCCCUCCGUCCggaAaugcuUGUcuuaaAuuUGuauAaAuauGgAuGuaUcuAgacaUauuuUAGUucUagAuaCaUcCauaUUUAuaC 96    
                  +A :AC C : C   C :::AA:::U        AU+UG AUA AUAUG AU:UA :U :A+AU U+     U: A: UA:AU  AUAU UAU  
     chr5 160174 GUAUCACACAUACUCACACACAAGCAU--------AUAUGCAUAUAUAUGUAUAUAUAUGUAUAUGUA---UAUAUAUGUAUAUGUAUAUAUAUGU 160258
                 ***********9999999999998877........788999999999999999999999998877653...3355555555555555555555555 PP

                                          v v            NC
                 ------>>>>>>>>>>>>>>>>>>>>>>>>>>>>>:::: CS
  RF00906     97 AaaUuuaagACAagcauUuccGGACGGAGGGAGUAuauu 135   
                 A+AU U      A:::UU::: G   G : G GU:U   
     chr5 160259 AUAUGU------AUGCUUGUGUGUGUGCGUGUGUGUGCG 160291
                 666666......7888999999999999*********** PP

>>

RNAfold
>chr5_6
AUCGUCGGGUAUCACACAUACUCACACACAAGCAUAUAUGCAUAUAUAUG
UAUAUAUAUGUAUAUGUAUAUAUAUGUAUAUGUAUAUAUAUGUAUAUGUA
UGCUUGUGUGUGUGCGUGUGUGUGCGUGUAUUUUU
.....((.(((.(((((((.(.((((((((((((((((((.((((((((((((((((((((((((....)))))))))))))))))))))))).)))))))))))))))))).).)))))))))).))....... (-66.60)

Length sequence

: 135

Length match:

116