chr5_8

cmsearch-Rfam

Family :

mir-207

Id:

RF00802

Type:

Gene; miRNA;

Taxonomy:

Eukaryota;

Ontology:

GO:0035068 micro-ribonucleoprotein complexRF00802

Description:

not description

Score:

33.8

E-value:

0.009

From sequence:

133224

To sequence:

133293

Alignments:

                      v        v      vvvvvvvvv                     vvvvvvvvv      v       v     NC
                 :<<<-<<<<<-<<<<<<--<<<<<<<<<<<<<<<<-<______>->>>>>->>>>>>>>>->>->>>>>>>>>>>>>>: CS
  RF00802      1 gagGcaGggGCGaGGgGCUGcggGgGgagCcggGCGGAGGCUGCGGCcugcGcuuCcCccggCUCcCCuCCccCuCcuU 79    
                  ::G  GGGG+G:G GG  G:          ::GCG AGGCUG  GC:: ++++U++C+C :CUCC C:CCCCC C:: 
     chr5 133224 UGGGGUGGGGUGGGAGGUGGG---------UGGGCGGAGGCUGUUGCUCGUUUAUUUCUCUCCUCCCCCCCCCCUCUCC 133293
                 *****************7777.........************************************************* PP

>>

RNAfold
>chr5_8
CGGGUGGGGUGGGGUGGGAGGUGGGUGGGCGGAGGCUGUUGCUCGUUUAU
UUCUCUCCUCCCCCCCCCCUCUCCCUCCU
.(((.((((.((((.((((((.(((((((((..(((....)))))))))...))).)))))).)))))))).))).... (-42.90)

Length sequence

: 79

Length match:

68