chr5_9

cmsearch-Rfam

Family :

MIR2118

Id:

RF01911

Type:

Gene; miRNA;

Taxonomy:

Eukaryota;

Ontology:

GO:0035068 micro-ribonucleoprotein complexRF01911

Description:

not description

Score:

38.5

E-value:

6.9e-05

From sequence:

119861

To sequence:

119985

Alignments:

                                v                             vv  vv                             vv   vv          NC
                 ::::::::<<<<<-<<<---<<<--<<<<<<<<<<-<<<<<<<<<<<-<<<-<-<<<<<<<____~~~~~~>>>>>>>>->>>-->>>>>>>>>>> CS
  RF01911      1 guuaGgaAGaagaAGaaaGAGAGguccugaGAgcggUaGGaAUGGGaACaUggAGGAAagcaUgA*[45]*guuUUCCcgAuGCCuCCCAUuCCuA 135   
                 G  A GAAG:AGA G :A AGAG  ::: AGA::GG :GG     +A C   G :GAA:::AUG       :::UUC:C   GCC       CC: 
     chr5 119861 GCCACGAAGGAGAGGUGA-AGAG--GAGGAGACGGGGGGG-----AAGC---GGAGAAGAGAUGG*[19]*CUCUUCUCUCCGCC-------CCCC 119951
                 *************88888.9***..666666666654444.....2234...4456666666654...6..77788999988888.......4444 PP

                                   v                 NC
                 ->>>>>>>>>>-->>>->>>->>>>>::::::::: CS
  RF01911    136 ucguUCucaggugCUCCuuCCucuuCCUUuuaguU 170   
                  C::UCU :::U CUCC: CCUCU:CC UU A +U
     chr5 119952 CCCGUCUUCUCU-CUCCCCCCUCUUCCCUUCACCU 119985
                 566666666666.********************** PP

>>

RNAfold
>chr5_9
CAUAACGAGAACAAGGAGCAUGGCCACGAAGGAGAGGUGAAGAGGAGGAG
ACGGGGGGGAAGCGGAGAAGAGAUGGCCACCGUCACUUACUCGCUCUCUU
CUCUCCGCCCCCCCCCGUCUUCUCUCUCCCCCCUCUUCCCUUCACCUUCA
UCGCCUCCCCACGUCUCCCC
......((((....(((((((((....((((((((((.(..((((((((((((((((((..(((((((.((((.(((...............))).)))).))))))).))))))))))))))).)))..))))))..)))))....)))).).)))).....))))... (-81.40)

Length sequence

: 170

Length match:

123