chr6_12

cmsearch-Rfam

Family :

MIR408

Id:

RF00690

Type:

Gene; miRNA;

Taxonomy:

Eukaryota;

Ontology:

GO:0035068 micro-ribonucleoprotein complexRF00690

Description:

not description

Score:

29.9

E-value:

0.00016

From sequence:

244221

To sequence:

244128

Alignments:

                                    v                                                        v                   NC
                 :::::::::::..:::::<<<-<<<<<<<-<<<<<<-<<<<<-<---~~~~~~>>>>>>->>>>>>->>>>>>>->>>::::::::::::::::: CS
  RF00690      1 aauUGGugAug..AgAugGAGACaGGGAagAgGCAGaGCAuGaGAUG*[49]*CCaUGCACUGCcUCuUCCCuGGCUCCuuucuCuccucuuUuu 136   
                  +UUG U+A G  A + GG :A : GGAAGAGGCA: GC::G GA G      CC::GC :UGCCUCUUCC :  : C +U C+CUCC+C  U U
     chr6 244221 UGUUGCUUAGGugAAUAGGAAAGCUGGAAGAGGCAA-GCGGG-GAAG*[ 8]*CCCCGC-UUGCCUCUUCCAGCCUCCUCUCCCCUCCCCCGUCU 244128
                 *****99886611555678889*************9.*****.8866...7..8*****.9************987777999************* PP

>>

RNAfold
>chr6_12
GAGAGGUACCACAGUUGCCAAGACGGGGGAGGGGAGAGGAGGCUGGAAGA
GGCAAGCGGGGAGGACAGGCUUCCCCGCUUGCCUCUUCCAGCUUUCCUAU
UCACCUAAGCAACACCCUUCGCCAGGCCUCUGCCA
...........(((..(((..(.((((((((((((.((((((((((((((((((((((((((((.....))))))))))))))))))))))).))))).))).))).........)))))))..)))..)))... (-76.70)

Length sequence

: 135

Length match:

92