chr6_13

cmsearch-Rfam

Family :

MIR408

Id:

RF00690

Type:

Gene; miRNA;

Taxonomy:

Eukaryota;

Ontology:

GO:0035068 micro-ribonucleoprotein complexRF00690

Description:

not description

Score:

29.8

E-value:

0.00018

From sequence:

49201

To sequence:

49085

Alignments:

                                       v                                                  v                        NC
                ::::::::::::::::<<<-<<<<<<<-<<<<<<-<<<<<.-<---~~~~~~--->..>>>>>->>>>>>->>>>>>>->>>:.:::::::::::::: CS
  RF00690     1 aauUGGugAugAgAugGAGACaGGGAagAgGCAGaGCAuG.aGAUG*[46]*CuCC..CaUGCACUGCcUCuUCCCuGGCUCC.uuucuCuccucuuU 134  
                A+  GG+G  GAG  G:A A :: GAAG:GG  G GC::: +GAUG      CUCC  :::GCAC  CC:CUUC+:: G U:C +UUCUC++CU+U U
     chr6 49201 AGCAGGAGGAGAGGCGCAGAGUA-GAAGGGGGGGGGCGAAgGGAUG*[24]*CUCCugCUCGCACUCCCCCUUCAUACGUUGCuCUUCUCAUCUUUAU 49087
                ***********************.***************9999999...9..5778899************************99************* PP

                   NC
                :: CS
  RF00690   135 uu 136  
                UU
     chr6 49086 UU 49085
                ** PP

>>

RNAfold
>chr6_13
GUGUUGGAAAAAUAAAGAUGAGAAGAGCAACGUAUGAAGGGGGAGUGCGA
GCAGGAGUGGAGAGGCGGGAGGAGAGCUGCGCAUCCCUUCGCCCCCCCCC
UUCUACUCUGCGCCUCUCCUCCUGCUCGUCCCUAGC
.(((((.....................))))).......((((...((((((((((..(((((((((((((.((((..(((........)))........)))).)))).)))))))))))))))))))))))... (-50.50)

Length sequence

: 136

Length match:

115