chr6_19

cmsearch-Rfam

Family :

tRNA

Id:

RF00005

Type:

Gene; tRNA;

Taxonomy:

Eukaryota; Bacteria; Viruses; Archaea;

Ontology:

GO:0030533 triplet codon-amino acid adaptor activity

Description:

Transfer RNA (tRNA) molecules are approximately 80 nucleotides in length. Their secondary structure includes four short
double-helical elements and three loops (D, anti-codon, and T loops). Further hydrogen bonds mediate the
characteristic L-shaped molecular structure. tRNAs have two regions of fundamental functional importance: the anti-codon, which
is responsible for specific mRNA codon recognition, and the 3' end, to which the tRNAs
corresponding amino acid is attached (by aminoacyl-tRNA synthetases). tRNAs cope with the degeneracy of the
genetic code in two manners: having more than one tRNA (with a specific anti-codon) for
a particular amino acid; and 'wobble' base-pairing, i.e. permitting non-standard base-pairing at the 3rd anti-codon
position.

Score:

31.2

E-value:

0.0013

From sequence:

69275

To sequence:

69188

Alignments:

                                                                                                           NC
                (((((((,.,<<<<___.___.._>>>>,<<<<<_______>>>>>,,..............,,<<<<<_______>>>>.>))))))): CS
  RF00005     1 GgagauaU.AGCucAgU.GGU..AgaGCgucgGaCUuaaAAuCcgaag..............gcgcgGGUUCgAaUCCcg.cuaucucCa 71   
                G:: ::AU A:C CAG  GGU   G G: :CGG:CUU AAA:CCG:A               +C::: GUUCGA UC :: :U:: ::C+
     chr6 69275 GCCGCGAUgAGCUCAGCuGGUgcUGGGU-GCGGGCUUCAAACCCGUA-ggugaguugcucucACAGCCGUUCGAUUCGGCcUUCGUGGCG 69188
                ********55***********9999999.******************.8************95*************************** PP

RNAfold
>chr6_19
GCCACGAAGGCCGAAUCGAACGGCUGUGAGAGCAACUCACCUACGGGUUU
GAAGCCCGCACCCAGCACCAGCUGAGCUCAUCGCGGC
(((.(((.(((((.......)))))(((((.....)))))...((((((...))))))..(.((((....)))).)....))).))) (-31.80)

Length sequence

: 87

Length match:

86