chr6_20

cmsearch-Rfam

Family :

tRNA-Sec

Id:

RF01852

Type:

Gene; tRNA;

Taxonomy:

Eukaryota; Bacteria; Viruses; Archaea;

Ontology:

GO:0030533 triplet codon-amino acid adaptor activity

Description:

not description

Score:

76.4

E-value:

6.4e-15

From sequence:

69275

To sequence:

69189

Alignments:

                       v                                                                           v        NC
                (((((((((,,<<<<<<____>>>>>><<<<<<_______>>>>>>,<<<<<________>>>>>,,<<<<_______>>>>))))))))) CS
  RF01852     1 GggggggcgaucggcccUGGUgggccguccGGgCUUCAAAcCCggaGggggcuagcaacggccccgGggGGUUCGAUUCCcccgccccccC 91   
                G:: :G: GA C::::CUGGUG::::GU:CGGGCUUCAAACCCG:AGG:G::U GC+   ::C:C+ G::GUUCGAUUC::CC :C: ::C
     chr6 69275 GCCGCGAUGAGCUCAGCUGGUGCUGGGUGCGGGCUUCAAACCCGUAGGUGAGUUGCU---CUCACA-GCCGUUCGAUUCGGCCUUCGUGGC 69189
                ******************************************************996...******.************************ PP

>>

RNAfold
>chr6_20
CGCCACGAAGGCCGAAUCGAACGGCUGUGAGAGCAACUCACCUACGGGUU
UGAAGCCCGCACCCAGCACCAGCUGAGCUCAUCGCGGCUC
.(((.(((.(((((.......)))))(((((.....)))))...((((((...))))))..(.((((....)))).)....))).))).. (-32.30)

Length sequence

: 90

Length match:

85