chr7_1

cmsearch-Rfam

Family :

Hsp83_3_UTR

Id:

RF02400

Type:

Cis-reg;

Taxonomy:

Eukaryota;

Ontology:

GO:0006417 regulation of translation

Description:

not description

Score:

23.6

E-value:

0.00094

From sequence:

170858

To sequence:

171003

Alignments:

                         vv                                v    v                v     v                          NC
                 --(((((((((((,,..<<<<<<<-<<<-----<<<--<<<-<<<<<<----<<<____>>>-->>>>->>->>>->>>------>>>->>>>>>> CS
  RF02400    216 UGuGGaGaagGaGgu..GcCaaGuAGCCCCGUUGCGGAGaGugugugaCCCAugcCAGUgcaCCucacugcCCuCCCGCuUCCCCGGCCaCuuGgC 309   
                 UG:GG:G:  GAG    G::::G: G::     G: G G:GU :G:  C  A:G:   U:C:C   :C+: CC:C  :CU     ::CC:C::::C
     chr7 170858 UGAGGUGGAUGAGAGggGAGGGGAGGGG-----GGGGGGGGUCGGAUACUGACGUUGAUACGCGAGUCACACCUCAUCCUC----CCCCUCCUCUC 170944
                 9999999855555551155555555444.....7777788899*****************************999987766....5556999999* PP

                     v                            v               vv          NC
                 ,,,,<<__________________________>>,,,,,,,,,,,,)))))))))-))-- CS
  RF02400    310 ACUCacuaCCCCCUCCCCUUCCCUUCUCCcCcguacccccCuCUCUCuCuuuCuCGCauc 369   
                   U  CU   CCCUC  C  C CU  UC  CCG  C + +CUCUC CUC  :C:C C:U 
     chr7 170945 GUUUUCUUGUCCCUCAACCGCUCU-AUCGUCCGUCCAUGUCUCUCGCUCUCUCACCCUUG 171003
                 ***********9999999887765.5667788*******************999999999 PP

>>

RNAfold
>chr7_1
ACACACGGGUGAGCGAACCACACAAGCACAUGCAUGAGGGGGGGGUGCAU
CAAGCGCACACGAAGAGUAAAGGGAAAGCAUCGAGUACACUAAGUUCAUA
GUGAGAAAGUAUAGGAGACGUGGAGGACGGGACGCAUGUGAGAUCGGAAG
GCGGGGAUAAGUGAGGUGGAUGAGAGGGGAGGGGAGGGGGGGGGGGGUCG
GAUACUGACGUUGAUACGCGAGUCACACCUCAUCCUCCCCCUCCUCUCGU
UUUCUUGUCCCUCAACCGCUCUAUCGUCCGUCCAUGUCUCUCGCUCUCUC
ACCCUUGUCAUCUGCUAGUGUCUUCAUCCCUCCCCCUCAUGUUGUCUGCA
AGGGCGGUGUGCAGGUGCGUCUGCAUGCUGAACAACCUCACAAAGCACAC
AGAAAGGGAGAGAGUAACGGCGAGAGCGACAGGGGGGUGCGGAACACGAG
CAGUCAUUAUAGAAGAUUA
......((.((..((..((.(((..(((...((((((((((((((.(.((.(((.((((....((((..(((((...............(((......)))(((((.(((...(((((((((((((((((..(((.(.((....)).)..)))(((.....(((((..((((((((((((((((((((((((((((((.(...(((..(((....)))..)))..))))))..))))))))))))))).)))))))))))))))....)))..)))))).))))))))))).))).))))))))))..).)))....))))))).)))))))))))))))))....)))..(..((((((((((......))))))))))..)..((((.....((.............................)).....))))))).))....))..)).)).............. (-175.10)

Length sequence

: 469

Length match:

144