chr7_2

cmsearch-Rfam

Family :

isrG

Id:

RF01390

Type:

Gene; sRNA;

Taxonomy:

Bacteria;

Ontology:

Not found

Description:

not description

Score:

23.3

E-value:

0.0036

From sequence:

429996

To sequence:

429920

Alignments:

                             v                            v      v                v             NC
                 ((-((((((-((((-(((((,<<____>>,,,,<<----<<<~~~~~~>>>---->>,)))))-))))-))))))-)) CS
  RF01390    126 GCUgccGCgccggcuGCcGcugcAcuugcuGaCGcugcugcg*[11]*cgcUUUUgCugCgGCugccgacGCggcUGC 208   
                 GCUGC G : C  CUG :GCUGC  UUGCUG  G:UG UGC        GCU   :CUGC: CUG  G : C GCUGC
     chr7 429996 GCUGCGGUGACGACUGUAGCUGCUGUUGCUGGUGUUGGUGCU*[ 5]*UGCUGAAGCUGCUGCUGCUGCUGCUGCUGC 429920
                 ************************************999983...3..59999************************* PP

>>

RNAfold
>chr7_2
AAGAGGAGUGGCGGCUACAGCAGGAGCUGAUCACGCUGCAGCUCGAACAG
CACCGCCAGCGGCUCGAAAACGAGCUUCGCCAAGUUCAGUUUCAGCAAGC
GCAGCAGCAGCAGCAGCAGCAGCUUCAGCAUGCGCAGCACCAACACCAGC
AACAGCAGCUACAGUCGUCACCGCAGCAACAUCAGCGGUCUCCGCUCCCG
GUUCAAGCAGCCAUGGUCGCGAUAGACGGGCGCCUUUACCGCAUGAUGCC
UGCCUCCUCAGGAGAGGCUUUUGUGAAG
(((((..(((((((((..(((.((((((((.(.((((((.(((.....)))...).)))))(((((....)))))........).)))))))).((..(((((((.(.(((.((....)).))).).)).))))).))..........((....)).)))..))))))))).((((...((((((((((....((.((((......((.((....)).))......)))).))....))))).))))).))))..((((....)))))))))...... (-95.20)

Length sequence

: 278

Length match:

75