chr7_5

cmsearch-Rfam

Family :

MIR408

Id:

RF00690

Type:

Gene; miRNA;

Taxonomy:

Eukaryota;

Ontology:

GO:0035068 micro-ribonucleoprotein complexRF00690

Description:

not description

Score:

25.2

E-value:

0.0045

From sequence:

191457

To sequence:

191326

Alignments:

                                                vvv  v v                                                       v  NC
                 ::::::::::::::::<<<-<<<<<<<-<<<<<<-<<<<<-<---<<_________________________________~~~~~~>>---->>>> CS
  RF00690      1 aauUGGugAugAgAugGAGACaGGGAagAgGCAGaGCAuGaGAUGGaGCUaucAAcaAauugUGAgAaaaagaUGgaauU*[ 8]*uCcCuCCCaU 98    
                 A+  GG+G  + GA++GAGA AG:GA:GA      G :   GAU G GCU U+ A A   U+UGA+ +  +  UG ++UU       C+   C  :
     chr7 191457 AGGAGGAGCGAGGAGAGAGAGAGAGAGGAGGGG--GGCAGCGAU-GUGCUGUUCAAAGUAUCUGAACGCCUCGUGUUUUU*[11]*GCU---CUAG 191363
                 *****************************8744..333444566.56677777777777778888777776666666555...3..443...3333 PP

                 v  vvv                                 NC
                 >>->>>>>>->>>>>>>->>>::::::::::::::::: CS
  RF00690     99 GCACUGCcUCuUCCCuGGCUCCuuucuCuccucuuUuu 136   
                  C C    UC:UC:CU  CUC + UC++ +CU+U+U U
     chr7 191362 ACGC-GUUUCCUCUCUCUCUCUCGUCCUCUCUUUCUCU 191326
                 3332.36899999************************* PP

>>

RNAfold
>chr7_5
AAGAGAAAGAGAGGACGAGAGAGAGAGAGGAAACGCGUCUAGAGCACGAC
AAACCUAAAAACACGAGGCGUUCAGAUACUUUGAACAGCACAUCGCUGCC
CCCCUCCUCUCUCUCUCUCUCCUCGCUCCUCCUCG
..(((..((.(((((.(((((((((((((((.((((.((.........................)).))))(((((...))))).((((.....))))......)))))))))))))))))))).)).))).... (-52.70)

Length sequence

: 135

Length match:

130