chr7_6

cmsearch-Rfam

Family :

MIR477

Id:

RF00780

Type:

Gene; miRNA;

Taxonomy:

Eukaryota;

Ontology:

GO:0035068 micro-ribonucleoprotein complexRF00780

Description:

not description

Score:

48.4

E-value:

1.1e-08

From sequence:

491500

To sequence:

491397

Alignments:

                                                                                                                  NC
                 ::<<<<-<<<<<<<<<<<<-<<<<<<<<<<<<<____...__________________..____________>>>>>>>>>>>>>->>>>>>>>>> CS
  RF00780      1 GAaGgcUcCAaucuCcCuCAgAGGCuuCCAacaUuuC...AGauUAaauAauuaCuuu..uAauuAUGggAAuguUGGaaGCCUcuGaGgGagauU 91    
                  A:::C : AA::: CC:CA:A GC::CC:ACAUU+     G+U A ++ +U+AC+++  +A    UG GAAUGU:GG::GC U:UG:GG :::UU
     chr7 491500 CAGCCCCAAAAGGCACCGCAAACGCACCCCACAUUCGccuCGUUGACGCCUUCACCGCagAACCGCUGCGAAUGUGGGGUGCGUUUGCGGUGCCUU 491405
                 *********************************998777777777767777776655411456678999999************************ PP

                          NC
                 >>->>>>: CS
  RF00780     92 GgAgcCuU 99    
                  : G:::U
     chr7 491404 UUGGGGCU 491397
                 ******** PP

>>

RNAfold
>chr7_6
GCCCCAAAAGGCACCGCAAACGCACCCCACAUUCGCAGCGGUUCUGCGGU
GAAGGCGUCAACGAGGCGAAUGUGGGGUGCGUUUGCGGUGCCUUUUGGGG
CUG
((((((((((((((((((((((((((((((((((((..((....(((.......)))....))..)))))))))))))))))))))))))))))))))))).. (-85.90)

Length sequence

: 103

Length match:

102