chr7_7

cmsearch-Rfam

Family :

MIR477

Id:

RF00780

Type:

Gene; miRNA;

Taxonomy:

Eukaryota;

Ontology:

GO:0035068 micro-ribonucleoprotein complexRF00780

Description:

not description

Score:

41.0

E-value:

1.5e-06

From sequence:

492153

To sequence:

492256

Alignments:

                   v          v                                                                              v    NC
                 ::<<<<-<<<<<<<<<<<<-<<<<<<<<<<<<<____....______..________________________>>>>>>>>>>>>>->>>>>>>>> CS
  RF00780      1 GAaGgcUcCAaucuCcCuCAgAGGCuuCCAacaUuuC....AGauUA..aauAauuaCuuuuAauuAUGggAAuguUGGaaGCCUcuGaGgGagau 90    
                  A ::C : AA::  CC:CA:A GC::CC:ACAUUU      G UU    +     + U+U AA  A G GAAUGU:GG::GC U:UG:GG  ::U
     chr7 492153 CAACCCCAAAAGGCACCGCAAACGCACCCCACAUUUGcagc-GGUUUugCGGUGAAGGUGUCAACGAGGUGAAUGUGGGGUGCGUUUGCGGUUCCU 492247
                 *********************************99987663.33333353333344778899999999**************************** PP

                        v  NC
                 >>>->>>>: CS
  RF00780     91 UGgAgcCuU 99    
                 U : G:: U
     chr7 492248 UUUGGGGCU 492256
                 ********* PP

RNAfold
>chr7_7
AACCCCAAAAGGCACCGCAAACGCACCCCACAUUUGCAGCGGUUUUGCGG
UGAAGGUGUCAACGAGGUGAAUGUGGGGUGCGUUUGCGGUUCCUUUUGGG
GCU
..((((((((((.((((((((((((((((((((((((..((....(((.......)))....))..)))))))))))))))))))))))).)))))))))).. (-70.00)

Length sequence

: 103

Length match:

102