chr7_9

cmsearch-Rfam

Family :

MIR854

Id:

RF00893

Type:

Gene; miRNA;

Taxonomy:

Eukaryota;

Ontology:

GO:0035068 micro-ribonucleoprotein complexRF00893

Description:

not description

Score:

25.6

E-value:

0.0051

From sequence:

270628

To sequence:

270491

Alignments:

                  v v                 v                                                                           NC
                 <<<<------<-<<<<<<<<<<<<<__________________________...__________________________________________ CS
  RF00893      1 CGGaUGAGGAuAGgGagGaGgaGuaUGAUACGAGCAUGUAUCAUUUCAGUG...AGCACGUACCUCCAGCGCGGGAGAGCAAGAGCUUGAGUGAAG 93    
                 C : U AGGA:AGGGA::::: G:A GA A   GCA          C GUG   AG A GUA  UC AG   G GAGAGCAAGAG   GA UGAA 
     chr7 270628 CACAUAAGGAGAGGGAGAGAGAGAAAGAGAGACGCAC-------AGCGGUGagaAGAAAGUAUAUCAAGUAUGAGAGAGCAAGAGUAAGA-UGAAU 270541
                 *************************999887777664.......345555511156789**************************98776.45554 PP

                           v                   v v  NC
                 ~~~~~~~>>>>>>>>>>>>->->------->>>> CS
  RF00893     94 *[101]*ugCuuCuCuuCuACuaCAGCUAUuCCG 221   
                        U:C :::::UCU CU:  G  AU : G
     chr7 270540 *[ 24]*UUCCCUCUCUCU-CUCUCGUCAUAGAG 270491
                 ....7..************.************** PP

RNAfold
>chr7_9
CAAAUAUACGCAUCAUCCGAAGCUUCUCUCUAUAUUUAUCUCUCUAUGAC
GAGAGAGAGAGAGGGAAAGUAGCCAAAUCAGUCUUUGCUCGAUUCAUCUU
ACUCUUGCUCUCUCAUACUUGAUAUACUUUCUUCUCACCGCUGUGCGUCU
CUCUUUCUCUCUCUCCCUCUCCUUAUGUGUGCGUGUGUCUGGCAUACAGA
GACUGUCUUACCUCUCCUCUC
((.(((((((((.(((.............................((((.(((((.(((((((((((((.((...(((((((....))).))))..................(((....)))................(((...)))...))))))))))))))).))))).)))))))))))))))).)).......((((..........))))..... (-48.00)

Length sequence

: 221

Length match:

136