chr8_1

cmsearch-Rfam

Family :

Hsp83_3_UTR

Id:

RF02400

Type:

Cis-reg;

Taxonomy:

Eukaryota;

Ontology:

GO:0006417 regulation of translation

Description:

not description

Score:

24.0

E-value:

0.00068

From sequence:

198929

To sequence:

198707

Alignments:

                                                                                      vv  v    v                  NC
                 [[[[[[[[[[-[[[[-[[[[[[,,,,,,(((((--((--(((((((((((,,<<<<<<<-<<<-----<<<--<<<-<<<<<<----<<<.___   CS
  RF02400    179 GcguCaggacUGaagGaGaGCGAAuCuCaGGGCUCgGUGuGGaGaagGaGguGcCaaGuAGCCCCGUUGCGGAGaGugugugaCCCAugc.CAG   271   
                 G:G: A::A: ::AG A :::G A    :GG:: C::  ::GAGA::GAG          G:CC  UUG     :GU:  :::C  AU:: CA 
     chr8 198929 GAGAGAGGAAAAGAGAAGGAGGCACAAGCGGUGGCGAG-AUGAGAGAGAGA---------GACCUUUUGGG---GGUAAGGCGCUAAUCGcCAA   198849
                 *********************************99986.666777777774.........66666666533...33444555555555443433   PP

                                  v        v vv                      v                            v               NC
                 ~~~~~..>>>-->>>>->>-....>>>->>>------>>>->>>>>>>,,,,<<__________________________>>,,,,,,,,,,,,)) CS
  RF02400    272 *[1]*..gcaCCucacugcC....CuCCCGCuUCCCCGGCCaCuuGgCACUCacuaCCCCCUCCCCUUCCCUUCUCCcCcguacccccCuCUCUCu 357   
                        ::AC ::: U :C    C:+C  C+U   CG:CC       AC C    C            CC UCUC CC    CC     C C CU
     chr8 198848 *[2]*agCGACACGCUUGUCauucCCACGACCUUUUCGUCC-------ACACGUGGCA-------UCGUCCAUCUCGCCUGGUCC-----CCCCCU 198775
                 ..2..434444443333333111022122223333333333.......3333222222.......22223334444444443332.....234488 PP

                                            vv v         v vv                           NC
                 )))))))-))--))--))))),,,,<<<<-<<_______>>->>>>]]]]]]]]]]-]]]]]]]]---]] CS
  RF02400    358 CuuuCuCGCaucCuCUGCCCuCuCACCGgCGCGccGGGCGCAcCGGCGCuCuuuuCCguccuGauUUugC 427   
                 C::UCUC ::  :: U::CC:C   :C  C C  C G  G    G:C::: UUU:: :U::U :UUU :C
     chr8 198774 CUCUCUCCAU--UCAUCACCGCCACUCACCGCUGCCGCAGACUCGACCUCUUUUCUUUUUUUUUUUUCGC 198707
                 8899998665..67889999998888888766433333333356************************** PP

>>

RNAfold
>chr8_1
CUGGCUCGUCCCCCCCCCCUCCUCCUCCCUCCCCUCCACACUCAACGCAC
ACACAAACGUGCGCCACAUCAAGAGCGCACAGGCAGCCUCGAGGACGCAG
AAGUUGCGAAGCGAAACGAAUCAGCGAAAAAAAAAAAAGAAAAGAGGUCG
AGUCUGCGGCAGCGGUGAGUGGCGGUGAUGAAUGGAGAGAGAGGGGGGGA
CCAGGCGAGAUGGACGAUGCCACGUGUGGACGAAAAGGUCGUGGGAAUGA
CAAGCGUGUCGCUAGUUGGCGAUUAGCGCCUUACCCCCAAAAGGUCUCUC
UCUCUCAUCUCGCCACCGCUUGUGCCUCCUUCUCUUUUCCUCUCUCCUCC
CGACACGGCGUGCUGCGAUAACGUGGAACGCCAUCGAGUGGACGUGGGGA
AAGGGGUGAAGCAGAUUUGAGCCCGAUCUUCUCCCUCCCUUGACUCUCUC
UCUCUCUGGAAUGGAGUGGU
..........................((((((..((((.......(((((........)))))........((((.....(((.((..((((((....(((((((((((..((...))..)).))))..................((((((((((((((((..((((.(((((((.(((((...(((((((((((((((.(((.(((...(((......)))))).)))........(((((....)))))..((((((((((....))))))..))))....)))))......))))))))))))))))))))))))))..)))).....(((((((((((.((((.(.(((...(((((.(((((....))))).))))).))).).))).).)))))))))))....)))))))))).))....))))).....))))))..)).))))))).))))..)))).)). (-170.30)

Length sequence

: 470

Length match:

221