chr8_10

cmsearch-Rfam

Family :

MIR408

Id:

RF00690

Type:

Gene; miRNA;

Taxonomy:

Eukaryota;

Ontology:

GO:0035068 micro-ribonucleoprotein complexRF00690

Description:

not description

Score:

25.0

E-value:

0.0054

From sequence:

294493

To sequence:

294297

Alignments:

                                                                                                                  NC
                 ::::::::::::::::<<<-<<<<<<<-<<<<<<..........................................-<<<<<.-<---...<<___ CS
  RF00690      1 aauUGGugAugAgAugGAGACaGGGAagAgGCAG..........................................aGCAuG.aGAUG...GaGCU 50    
                  A+  G+G  +A A+ G:G  :GGGA:G:GG::G                                          +GC::G + A G   G:GC 
     chr8 294493 CAAAAGAGGCAACAGUGGGGAGGGGAGGGGGUGGcgaaugggaacucggcuguggugaugauaaacgucucucugaUGCGCGuGCACGuguGGGCC 294398
                 ******************************999999999999999999999999999999999999999999999966666664666666999999 PP

                                                                                                                  NC
                 __________...........____________________________>>---->>>>>>-...>>>>.>>->>>>>>>->>>:::::::::::: CS
  RF00690     51 aucAAcaAau...........ugUGAgAaaaagaUGgaauUGUUgUuGCuCcCuCCCaUGCA...CUGC.cUCuUCCCuGGCUCCuuucuCuccuc 131   
                 A CA C+ AU           UGUGAG +   GA  G+ +U UU+UU  :C  +  C::GC    C::C C:C:UCCC: GC:CC+ UCU+ C+UC
     chr8 294397 ACCAGCGGAUgccucgucccuUGUGAGUGUGCGAAUGUCCUUUUUUUUUUCGAAGGCGCGCCuugCCGCaCCCCUCCCCUGCCCCCCUCUUCCUUC 294302
                 9999998888999999999999999999999999999999999999999999888899999889999998999*********************** PP

                       NC
                 ::::: CS
  RF00690    132 uuUuu 136   
                 U+U U
     chr8 294301 UCUCU 294297
                 ***** PP

>>

RNAfold
>chr8_10
GAGAGAAGGAAGAGGGGGGCAGGGGAGGGGUGCGGCAAGGCGCGCCUUCG
AAAAAAAAAAGGACAUUCGCACACUCACAAGGGACGAGGCAUCCGCUGGU
GGCCCACACGUGCACGCGCAUCAGAGAGACGUUUAUCAUCACCACAGCCG
AGUUCCCAUUCGCCACCCCCUCCCCUCCCCACUGUUGCCUCUUUUG
((((((.((((.((.((((.((((((((((.(.(((...(((.(((((..........)))).)...)))..........(((((..(((....(.((((((.....((((.....(......)....))))......))))))).)))..))))).....))).))))))))))))))).)).)).)))))))). (-72.30)

Length sequence

: 196

Length match:

195