chr8_2

cmsearch-Rfam

Family :

isrG

Id:

RF01390

Type:

Gene; sRNA;

Taxonomy:

Bacteria;

Ontology:

Not found

Description:

not description

Score:

32.7

E-value:

6.3e-06

From sequence:

135581

To sequence:

135405

Alignments:

                                    v   vvv                                                           v v         NC
                 :::::{{{{{-{{{--{{{{--{{{{[[[[[[[[--[[[[[[[,,,,,,,,,,,,,,,,~~~~~~((-((((((((-((((((-((((-(((((,< CS
  RF01390      1 GUUUugcggCauccUCuGCcCuGGugGCcgcugCUCCgGCaGCAGuaCUGCUUUGCGCc*[57]*GaCgaGGcGGCUgccGCgccggcuGCcGcug 147   
                      ::GGC :::U U:C  UGG  ::C:::G:  C:GC:GC              C       :: ::::C:GCUG:CGC: : G UGCCG: :
     chr8 135581 CACAAAAGGCGCUGUGUACGGUGGCCAACAGCGUCGCAGCCGC--------------C-*[ 3]*UCACUCUCCGCUGUCGCUGUUGUUGCCGUCU 135504
                 *******************999977766666666667777777..............2....5..9999999999999999999999999999988 PP

                                       v v                                                   vvv v                NC
                 <____>>,,~~~~~~,)))))-))))-))))))-))))))))-)),,,,]]]]]]]--]]]]]]]],,~~~~~~,,}}}}}}}}--}}}-}}}}}: CS
  RF01390    148 cAcuugcuG*[31]*ugCgGCugccgacGCggcUGCCgCCucuuCcGAcGCuGCcGccGcagcgGCuG*[10]*AucaCCgGCacuggagGccgcc 272   
                 :    :: G       :CGGCU C : :GCG:C GC:G::::U::C A GC:GC:GC :C:::G:: G      A+   C G:AC :::+GCC:: 
     chr8 135503 UCUCCGACG*[10]*GGCGGCUUCUACAGCGACAGCGGAGAGUGACUAGGCGGCUGCGACGCUGUUGG*[ 1]*AA---CAGUACACAGAGCCUUU 135412
                 888888876...9..89999999999999999999999999999999987777777766666665543...2..65...89*************** PP

                         NC
                 ::::::: CS
  RF01390    273 UgugUUU 279   
                 UGUG  U
     chr8 135411 UGUGAGU 135405
                 ******* PP

>>

RNAfold

>chr8_2
AGGCUCGCCAUACUGCUGCCUGUAGGGAGAACCGCUCUGCAGCCACCCUU
ACUCACAAAAGGCUCUGUGUACUGUUGCCAACAGCGUCGCAGCCGCCUAG
UCACUCUCCGCUGUCGCUGUAGAAGCCGCCUUCUCCCGAGCGUCGGAGAA
GACGGCAACAACAGCGACAGCGGAGAGUGACAAGGCGGCUGCGACGCUGU
UGGCCACCGUACACAGCGCCUUUUGUGAGUCAGGGAAGCUGCAGAGCGGA
UCAACCCACAGGCAGCAGAAUGGCGAGA
...((((((((.(((((((((((.(((.((.((((((((((((..((((.(((((((((((((.((((((((.((.((((((((((((((((((((((.(((((((((((((((((((((.(..((((.(((((((........))))))).))))..).))))))))))))))))))))).)))))))))))))))))))))).)).)))))))).))))))))))))).))))..)))))))))))).))..)))))))))))))).)))))))). (-235.20)

Length sequence

: 278

Length match:

175