chr8_4

cmsearch-Rfam

Family :

mir-241

Id:

RF00809

Type:

Gene; miRNA;

Taxonomy:

Eukaryota;

Ontology:

GO:0035068 micro-ribonucleoprotein complexRF00809

Description:

not description

Score:

29.1

E-value:

0.0018

From sequence:

338221

To sequence:

338315

Alignments:

                         v                vv      v                         v       vv                v           NC
                 ::::<<-<<<<-<<<<<<<<<<<-<<<<<<<<<<<<_____________________>>>>>->>>>>>>->>>>>>>>>>>->>>>--->>:::: CS
  RF00809      1 aagaggUguCaAaGuuGagGcaGGuGcGaGaaauGaCGgaAucuuuuuAauaAUCGUuCauuGuCuCgCaGCugCuuCaaCuGuGacuuaccuaug 96    
                  AGAG  :  A : ::G:GG:AGG:  GAGAAA  AC + A  + U       U  UU  UU UCUC  : CU:CU:C:: :GU  : U  C +UG
     chr8 338221 GAGAGGAGCAAGGGGAGGGGGAGGGCCGAGAAACGACAAGACAACUCGUCGUGUUUUUUUUUUUCUCUAC-CUCCUCCUCUCGUUUUCUUUCCUUG 338315
                 ***************************************999999999999999999***********98.**************99999999*** PP

RNAfold
>chr8_4
GAGAGGAGCAAGGGGAGGGGGAGGGCCGAGAAACGACAAGACAACUCGUC
GUGUUUUUUUUUUUCUCUACCUCCUCCUCUCGUUUUCUUUCCUUGU
(((((((((.(((((((((((((((..((((((.((((.(((.....))).)))).))))))..)))).))))))))))).).))))))))..... (-41.70)

Length sequence

: 96

Length match:

93