chr8_5

cmsearch-Rfam

Family :

mir-253

Id:

RF01064

Type:

Gene; miRNA;

Taxonomy:

Eukaryota;

Ontology:

GO:0035068 micro-ribonucleoprotein complexRF01064

Description:

not description

Score:

30.6

E-value:

0.0023

From sequence:

207549

To sequence:

207445

Alignments:

                    v       v    v                vvv      v         v       vvv                v    v        v   NC
                 ::<<<<<--<<<<<<<<<<<<<<<<<<<-<<<-<<<<<<<<<<___~~~~~~>>>->>>>>>>>>>->->>>>>>>>>>>>>>>>>>--->>>>>: CS
  RF01064      1 aUcguuCgagucgCcgccCuucuCaCaCACCucaCuaaCaCuaAcc*[ 9]*uaGAuGuuaGuaGGCGUuGuGggaaGggcgGcgacgauGaacgu 99    
                 AU: U:C  ::C:CC: :C::CUC:C:C C::C +U:ACAC: AC        :G UGU:   ::G G :G:GGG::G: :GG: ::GA G:A :U
     chr8 207549 AUUCUCCUCUCCUCCCCUCCCCUCCCCCUCACCUUUCACACGAACA*[17]*GCGGUGUG--UGUGUGAGGGGGGGGGGAGGGA-GAGAGGGAAAU 207446
                 ***************************************9987665...8..46666666..5777776676666666666666.57899****** PP

                   NC
                 : CS
  RF01064    100 a 100   
                 +
     chr8 207445 U 207445
                 * PP

>>

RNAfold
>chr8_5
AUUUCCCUCUCUCCCUCCCCCCCCCCUCACACACACACCGCCAUCCAGCU
ACAGCACCUGUUCGUGUGAAAGGUGAGGGGGAGGGGAGGGGAGGAGAGGA
GAAU
..((((((((((((((((((.(((((((((...(((((...((....((....))...))...)))))....))))))))).))))))))..))))))).))). (-58.80)

Length sequence

: 104

Length match:

103