chr8_6

cmsearch-Rfam

Family :

mir-316

Id:

RF00814

Type:

Gene; miRNA;

Taxonomy:

Eukaryota;

Ontology:

GO:0035068 micro-ribonucleoprotein complexRF00814

Description:

not description

Score:

39.6

E-value:

7.5e-06

From sequence:

135551

To sequence:

135438

Alignments:

                                v                                                         v                 NC
                 <<<<<<<<<<-<<<-<<<<<<<<<<<-<<<-<<<<<<<<_____~~~~~~>>>>>>>>-->>>>>>>>>>>>>>->>>->>>>->>>>>> CS
  RF00814      1 aaauuCuaGuCgauUuGuCuuuuuCCGCuuACuGcCGuuUuAaU*[ 5]*aaCGgCaGGaaaGGGaaaaaGgCgUauuUaCuaUGaauuu 89    
                 :::U:::AG:C:::U G:C::U:UCCG    CUG:CG:U U  U      A:CG:CAG     GGA:A::G:C  ::: :CU: ::A:::
     chr8 135551 GCGUCGCAGCCGCCUUGUCACUCUCCG----CUGUCGCUGUUGU*[39]*AGCGACAGC----GGAGAGUGACUAGGCGGCUG-CGACGC 135438
                 **************************9....9999999976555...9..999999995....********************.****** PP

RNAfold
>chr8_6
CGUCGCAGCCGCCUAGUCACUCUCCGCUGUCGCUGUAGAAGCCGCCUUCU
CCCGAGCGUCGGAGAAGACGGCAACAACAGCGACAGCGGAGAGUGACAAG
GCGGCUGCGACGC
((((((((((((((.(((((((((((((((((((((.(..((((.(((((((........))))))).))))..).))))))))))))))))))))).)))))))))))))). (-97.40)

Length sequence

: 113

Length match:

112