chr9_10

cmsearch-Rfam

Family :

MIR408

Id:

RF00690

Type:

Gene; miRNA;

Taxonomy:

Eukaryota;

Ontology:

GO:0035068 micro-ribonucleoprotein complexRF00690

Description:

not description

Score:

27.1

E-value:

0.0012

From sequence:

365463

To sequence:

365577

Alignments:

                                           v  v   v v     v   vv        vv    v    v v   v  v                     NC
                 ::::::::::::::::<<<-<<<<<<<-<<<<<<-<<<<<-<---<<__~~~~~~>>---->>>>>>->>>>>>->>>>>>>->>>:.:::::::: CS
  RF00690      1 aauUGGugAugAgAugGAGACaGGGAagAgGCAGaGCAuGaGAUGGaGC*[39]*uCcCuCCCaUGCACUGCcUCuUCCCuGGCUCC.uuucuCuc 128   
                 ++UUGG    GAGA++GAGA AG GA G: GCA   CA::  AUG+AGC         C+C ::UG   UGC :  UC CU GCUC  U UCUCUC
     chr9 365463 GGUUGGC--CGAGAGAGAGAGAGCGAGGGAGCAUGCCACA-CAUGUAGC*[23]*---CACACGUGUGUUGCCCGGUCGCUCGCUCUcUCUCUCUC 365569
                 ****975..7888999*****************9778888.67775554...8.....35556666669*****************98999***** PP

                          NC
                 :::::::: CS
  RF00690    129 cucuuUuu 136   
                 CUCU+U U
     chr9 365570 CUCUCUGU 365577
                 ******** PP

>>

RNAfold
>chr9_10
CUCCCUUGUCGGUUGGCCGAGAGAGAGAGAGCGAGGGAGCAUGCCACACA
UGUAGCUUCUCUUACGUCUCCCCCACCUCCACACGUGUGUUGCCCGGUCG
CUCGCUCUCUCUCUCUCCUCUCUGUUUCGCUCUCGA
.........(((..((..(((((((((((((((((.((.(..((.((((((((.............................)))))))).))..).)).)))))))))))))))))))..)))............ (-53.00)

Length sequence

: 136

Length match:

113