chr9_12

cmsearch-Rfam

Family :

tRNA

Id:

RF00005

Type:

Gene; tRNA;

Taxonomy:

Eukaryota; Bacteria; Viruses; Archaea;

Ontology:

GO:0030533 triplet codon-amino acid adaptor activity

Description:

Transfer RNA (tRNA) molecules are approximately 80 nucleotides in length. Their secondary structure includes four short
double-helical elements and three loops (D, anti-codon, and T loops). Further hydrogen bonds mediate the
characteristic L-shaped molecular structure. tRNAs have two regions of fundamental functional importance: the anti-codon, which
is responsible for specific mRNA codon recognition, and the 3' end, to which the tRNAs
corresponding amino acid is attached (by aminoacyl-tRNA synthetases). tRNAs cope with the degeneracy of the
genetic code in two manners: having more than one tRNA (with a specific anti-codon) for
a particular amino acid; and 'wobble' base-pairing, i.e. permitting non-standard base-pairing at the 3rd anti-codon
position.

Score:

56.7

E-value:

9.7e-11

From sequence:

281141

To sequence:

281223

Alignments:

                                                                                                      NC
                 (((((((,,<<<<______.._>>>>,<<<<<_______>>>>>,,...........,,<<<<<_______>>>>>))))))): CS
  RF00005      1 GgagauaUAGCucAgUGGU..AgaGCgucgGaCUuaaAAuCcgaag...........gcgcgGGUUCgAaUCCcgcuaucucCa 71    
                 G ::A:AU+G:::AGUGGU  A:::CGUC:::+U A   :::GA+            GCG:GGGUUC+AA CCC:CU:U:: CA
     chr9 281141 GGCAAGAUGGUCGAGUGGUccAAGACGUCACGUUCAGGUCGUGAU-cuccccuggagGCGUGGGUUCAAACCCCACUCUUGUCA 281223
                 *********************************************.**********74************************** PP

>>

RNAfold
>chr9_12
GCAAGAUGGUCGAGUGGUCCAAGACGUCACGUUCAGGUCGUGAUCUCCCC
UGGAGGCGUGGGUUCAAACCCCACUCUUGUCA
(((((((((.(.....).)))....((((((.......))))))((((...))))..(((((.......))))))))))).. (-24.50)

Length sequence

: 82

Length match:

81