chr9_14

cmsearch-Rfam

Family :

tRNA

Id:

RF00005

Type:

Gene; tRNA;

Taxonomy:

Eukaryota; Bacteria; Viruses; Archaea;

Ontology:

GO:0030533 triplet codon-amino acid adaptor activity

Description:

Transfer RNA (tRNA) molecules are approximately 80 nucleotides in length. Their secondary structure includes four short
double-helical elements and three loops (D, anti-codon, and T loops). Further hydrogen bonds mediate the
characteristic L-shaped molecular structure. tRNAs have two regions of fundamental functional importance: the anti-codon, which
is responsible for specific mRNA codon recognition, and the 3' end, to which the tRNAs
corresponding amino acid is attached (by aminoacyl-tRNA synthetases). tRNAs cope with the degeneracy of the
genetic code in two manners: having more than one tRNA (with a specific anti-codon) for
a particular amino acid; and 'wobble' base-pairing, i.e. permitting non-standard base-pairing at the 3rd anti-codon
position.

Score:

65.9

E-value:

2.6e-13

From sequence:

395608

To sequence:

395678

Alignments:

                                                                                         NC
                 (((((((,,<<<<_______>>>>,<<<<<_______>>>>>,,,,<<<<<_______>>>>>))))))): CS
  RF00005      1 GgagauaUAGCucAgUGGUAgaGCgucgGaCUuaaAAuCcgaaggcgcgGGUUCgAaUCCcgcuaucucCa 71    
                 GG:GA:AUAG:UCAGUGG AGA:C+UC:GA+U++   UC:GAA +C:CGGGU CGA UCCCG:U:UC:CC 
     chr9 395608 GGGGAAAUAGUUCAGUGGCAGAACAUCAGAUUGUGGCUCUGAAUACCCGGGUCCGAUUCCCGGUUUCCCCU 395678
                 *********************************************************************** PP

>>

RNAfold
>chr9_14
GGGAAAUAGUUCAGUGGCAGAACAUCAGAUUGUGGCUCUGAAUACCCGGG
UCCGAUUCCCGGUUUCCCCU
((((((..((((((.(.((.(((....).)).)).).))))))..(((((.......))))))))))).. (-22.70)

Length sequence

: 70

Length match:

69