chr9_3

cmsearch-Rfam

Family :

HOXA11-AS1_6

Id:

RF02142

Type:

Gene; lncRNA;

Taxonomy:

Eukaryota;

Ontology:

GO:0010629 negative regulation of gene expression

Description:

not description

Score:

20.4

E-value:

0.0047

From sequence:

289578

To sequence:

289714

Alignments:

                 ::::::::::::::::::::....::::::::::::::::::::::.::::::::::::::::::::..::::::::::::::::::::::::::: CS
  RF02142      6 UUuaUCGUCaaCCcGGAGCC....CcacGGCgGCUaaUGCAAGAgG.CCAAAAAUGUUUuGGAGGAA..GAAAAACAAAGGCAGGAAGUGGCgGCg 94    
                 U + UCGUC  C  GGAG C    Cc  G C GC     C A  gG  CA A AUGU  uGGAGGAA  G   A   A GG AGGA G GGCgGCg
     chr9 289578 UCCUUCGUCUGCUGGGAGGCaccuCCUUGACCGCCCUCACGACUGGuUCACAGAUGUGCUGGAGGAAagGUGGAGUGAGGGGAGGAGGCGGCGGCG 289673
                 555666666666666666431111344455555555555555544414666778999999999987633333455667777788887777777776 PP

                 :::::::::::::::::::::::::::........::::::::::: CS
  RF02142     95 GcCUGACGGUGCGUGUGUGUCUgcGga........GAAGGGAGGGA 132   
                 G     CGGUG G GUGUGU Ug+Gg         GA GGGAG G 
     chr9 289674 G-----CGGUGUGCGUGUGUGUGUGGUgugacgagGAGGGGAGAGG 289714
                 6.....4555555555555555544431111111134444554444 PP

>>

RNAfold
>chr9_3
ACCAGUCCUGUAACGUCGCUUCCUUCGUCUGCUGGGAGGCACCUCCUUGA
CCGCCCUCACGACUGGUUCACAGAUGUGCUGGAGGAAAGGUGGAGUGAGG
GGAGGAGGCGGCGGCGGCGGUGUGCGUGUGUGUGUGGUGUGACGAGGAGG
GGAGAGGGCCACGCAAGGGGAGCCAACA
.......((((..(((((((((((((((((......)))).(((((((.(((..(((((((.(((.....))).)))....))))...))).))).)))))))))))))))))...))))((.((.(.(.((((((((.(..(........)...).))))))))..).).))))... (-67.40)

Length sequence

: 178

Length match:

135