chr9_4

cmsearch-Rfam

Family :

MIR1023

Id:

RF01043

Type:

Gene; miRNA;

Taxonomy:

Eukaryota;

Ontology:

GO:0035068 micro-ribonucleoprotein complexRF01043

Description:

not description

Score:

30.9

E-value:

0.0015

From sequence:

365539

To sequence:

365693

Alignments:

                                                   v      v       v                     v  v                      NC
                 :::::::::::::<<<<<<<<<<<<<<<<<-<<<<<<<<<<<-<<<<<<<<<<---------------<<<<<<<<___________________> CS
  RF01043      1 GCGcAGugGACaCAgCuuGCAauUuacuguaCACUCUCUCCgUUUCcCUuCCcaUaAUGacuaGguUggucgAucgaguuaUuuuUUGuAuagAuc 96    
                 G+G+ G     + :GCU:GC :U::::::: C   CUCUC: U UC:CU :::A A    C   G  +: : :  GA  U       GUA  + UC
     chr9 365539 GUGUUGCCC-GGUCGCUCGCUCUCUCUCUCUC---CUCUCUGUUUCGCUCUCGACAUCCUCAGUGGCUGUGUGUCGACCUUA----CGUAAGUUUC 365626
                 ****99994.459*******999999988887...78888889**********99988887777777788888888776543....3445556678 PP

                 v  v                 v       v      v                                 NC
                 >>>>>>>----------->>>>>>>>>>->>>>>>>>>>>->>>>>>>>>>>>>>>>>::::::::::: CS
  RF01043     97 gaUcgacGaUcAggAgUugGGaAGgGAAUcGGAGAGAGUGuacagugAauUGCaaGcUUgAuuguUuuG 165   
                   : : :G  +A  A U ::: AG:GA   :GAGAGA  G :::::::A: GC:AGC:U         G
     chr9 365627 UGCUCGUGCCUAUCACUCCCAAAGCGAGAGAGAGAGA--GAGAGAGAGAGAGCGAGCGUACAGCGCGCG 365693
                 889999999999999999**********987777775..8888999999******************** PP

>>

RNAfold
>chr9_4
ACGUGUGUUGCCCGGUCGCUCGCUCUCUCUCUCUCCUCUCUGUUUCGCUC
UCGACAUCCUCAGUGGCUGUGUGUCGACCUUACGUAAGUUUCUGCUCGUG
CCUAUCACUCCCAAAGCGAGAGAGAGAGAGAGAGAGAGAGAGCGAGCGUA
CAGCGCGCGAGGGA
.(((((((((......(((((((((((((((((((((((((.(((((((.(((((((...(((...))).)))))))...((((..(((....)))))))..............))))))).)))))).)))))))))))))))))))..)))))))))..... (-84.40)

Length sequence

: 164

Length match:

153