chr9_5

cmsearch-Rfam

Family :

mir-253

Id:

RF01064

Type:

Gene; miRNA;

Taxonomy:

Eukaryota;

Ontology:

GO:0035068 micro-ribonucleoprotein complexRF01064

Description:

not description

Score:

35.4

E-value:

0.0001

From sequence:

339862

To sequence:

339950

Alignments:

                                                    v                     v                                     NC
                 ::<<<<<--<<<<<<<<<<<<<<<<<<<-<<<-<<<<<<<<<<~~~~~~>>>->>>>>>>>>>->->>>>>>>>>>>>>>>>>>--->>>>>:: CS
  RF01064      1 aUcguuCgagucgCcgccCuucuCaCaCACCucaCuaaCaCua*[12]*uaGAuGuuaGuaGGCGUuGuGggaaGggcgGcgacgauGaacgua 100   
                 AUCGU:   GUC::C:C:C::C:CAC:CACC: :C A   C::      ::G    U G::GG G :GUG:G::G:G:G::GAC    :ACGU+
     chr9 339862 AUCGUA---GUCCGCCCUCCCCUCACCCACCCACCCA---CAC*[15]*GUGC---UCGGGGGUG-GGUGAGGGGAGGGCGGAC----UACGUU 339950
                 ***998...6777777777777777778888888855...333...4..5554...568888888.777777777777777776....789*** PP

>>

RNAfold
>chr9_5
UAGACAUCGUAGUCCGCCCUCCCCUCACCCACCCACCCACACCCACACAC
ACAGACAGUGCUCGGGGGUGGGUGAGGGGAGGGCGGACUACGUUGGCCUU
....((.(((((((((((((((((((((((((((.((..(((...............)))...))))))))))))))))))))))))))))).))..... (-70.30)

Length sequence

: 100

Length match:

87