chr9_6

cmsearch-Rfam

Family :

mir-253

Id:

RF01064

Type:

Gene; miRNA;

Taxonomy:

Eukaryota;

Ontology:

GO:0035068 micro-ribonucleoprotein complexRF01064

Description:

not description

Score:

31.4

E-value:

0.0013

From sequence:

339950

To sequence:

339862

Alignments:

                                                  v  vv             vv  v                                   NC
                 ::<<<<<--<<<<<<<<<<<<<<<<<<<-<<<-<<<<<<<<~~~~~~>->>>>>>>>>>->->>>>>>>>>>>>>>>>>>--->>>>>:: CS
  RF01064      1 aUcguuCgagucgCcgccCuucuCaCaCACCucaCuaaCaC*[16]*GAuGuuaGuaGGCGUuGuGggaaGggcgGcgacgauGaacgua 100   
                 A CGU::  ::C:C::CCCU:::C:::C CC:    A CAC      G UG    U:GG G :::G:::AGGG::G:G::GA ::ACG +
     chr9 339950 AACGUAGUCCGCCCUCCCCUCACCCACC-CCCG---AGCAC*[14]*GGUG----UGGGUGGGUGGGUGAGGGGAGGGCGGA-CUACGAU 339862
                 ****997644444333333333333333.4443...34444...5..4444....456655433333333333333444332.689**** PP

>>

RNAfold
>chr9_6
UAGACAUCGUAGUCCGCCCUCCCCUCACCCACCCACCCACACCCACACAC
ACAGACAGUGCUCGGGGGUGGGUGAGGGGAGGGCGGACUACGUUGGCCUU
....((.(((((((((((((((((((((((((((.((..(((...............)))...))))))))))))))))))))))))))))).))..... (-70.30)

Length sequence

: 100

Length match:

87