chr9_9

cmsearch-Rfam

Family :

MIR408

Id:

RF00690

Type:

Gene; miRNA;

Taxonomy:

Eukaryota;

Ontology:

GO:0035068 micro-ribonucleoprotein complexRF00690

Description:

not description

Score:

26.9

E-value:

0.0013

From sequence:

229921

To sequence:

229787

Alignments:

                                                      v                              v                            NC
                 ::::::::::::::::<<<.-<<<<<<<-<<<<<<-<<<<<-<---<<____~~~~~~>>---->>>>>>->>>>>>->>>>>>>->>>::::::: CS
  RF00690      1 aauUGGugAugAgAugGAG.ACaGGGAagAgGCAGaGCAuGaGAUGGaGCUa*[37]*uCcCuCCCaUGCACUGCcUCuUCCCuGGCUCCuuucuC 126   
                  + UGG+GA G  A  GAG  C::GG :  G  : AG+::GAGA  G:GC        :CCC CCC:: C  :  C C: CC::GGCUC UUUC+C
     chr9 229921 UGCUGGAGAAGGAAC-GAGgCCGAGGGGUUGUGGGAGAGGGAGAGAGGGCAG*[37]*UCCCCCCCCC-CCUCCGCGCCUCCUCGGCUCUUUUCCC 229797
                 ***********7777.665278999999999888888888888888888765...9..6664444444.55566799999999999**99****** PP

                            NC
                 :::::::::: CS
  RF00690    127 uccucuuUuu 136   
                 UC+ +UUUUU
     chr9 229796 UCUAUUUUUU 229787
                 ********** PP

>>

RNAfold
>chr9_9
AAAAAAUAGAGGGAAAAGAGCCGAGGAGGCGCGGAGGGGGGGGGGGAGCG
AGUGAAUACGGUGAGAACGAGAGGAGCACACAGGCUGCCCUCUCUCCCUC
UCCCACAACCCCUCGGCCUCGUUCCUUCUCCAGCAC
.......((((((((..(((((((((.((...((((((((((((((.((.(((.......(((....(....)...)))....))))).)))))))))))))).....)))))))).))).))))))))....... (-60.70)

Length sequence

: 136

Length match:

133