gi_545778205_gb_U000_529

cmsearch-Rfam

Family :

rsmX

Id:

RF02144

Type:

Gene;

Dominio:

Eukaryota; Bacteria;

Ontology:

Not found

Description:

not description

Score:

23.2

E-value:

0.0036

From sequence:

1018933

To sequence:

1018997

Alignments:

                                                             v        v                                       NC
                               :::::<<<<<<<<<_____>>>>>>>>><<<<______>>>>~~~~~~,,,,,,,<<<<<<<<____>>>>>>>>::: CS
               RF02144       1 AacAACcggaGcgcAGGAagcgCuccgGGauCAaGGAaGauC*[42]*uUggaAAaaaCCCGCUUcGGCGGGuuuUUU 114    
                               AA AAC:G::     G AA    ::C:G:: :A   A : ::        ++AAAAA:CCCGC  C GCGGG:UUUUU
  gi_545778205_gb_U000 1018933 AAUAACUGAC-----GAAA----GUCAGUUCAAUUUACUAAA*[ 2]*CAAAAAAAACCCCGCAGCAGCGGGGUUUUU 1018997
                               ********98.....4555....89***77777777777777...8..5889999*********************** PP

>>

RNAfold

>gi_545778205_gb_U000_529
AUCUGCAGGCAUUGCUGGGUAAGGAAUAACUGACGAAAGUCAGUUCAAUU
UACUAAAGGCAAAAAAAACCCCGCAGCAGCGGGGUUUUUCUACCAGACGA
GAACUUAAGCCUGC
....((((((.(((((.((((((....(((((((....)))))))...))))))...))))).(((((((((((....)))))))))))...................)))))) (-40.50)

Length sequence:

114

Length match:

63