gi_545778205_gb_U000_502

cmsearch-Rfam

Family :

STnc240

Id:

RF02074

Type:

Gene; sRNA;

Dominio:

Eukaryota; Bacteria;

Ontology:

Not found

Description:

not description

Score:

34.2

E-value:

0.00057

From sequence:

3476646

To sequence:

3476563

Alignments:

                                                                                                                 NC
                               ::::::::::<<_______>>----..-------------.....--<<<<<<<<<__________>>>>>>>>>:::::: CS
               RF02074       1 uuaAauUaGuGCAAAAUACGCcgCu..UGcAAAAAAAgAa.....AauAACCGACGaUUUuAAAaGCGUCGGUUaUUUUUU 74     
                                 AA  U+ UGC AAA  CGC G U  UGC AAAAAA+AA     AA AACCG CG  U +  A GCG CGGUU UUUU U
  gi_545778205_gb_U000 3476646 GGAAGCUGAUGCGAAAGCCGCAGAUucUGCUAAAAAAUAAgcauuAAGAACCGCCGCCUGACCAGGCGGCGGUUUUUUUAU 3476566
                               *****************99**997522577777776666557789************************************ PP

                                   NC
                               ::: CS
               RF02074      75 Ugc 77     
                               U C
  gi_545778205_gb_U000 3476565 UAC 3476563
                               *** PP

>>

RNAfold

>gi_545778205_gb_U000_502
UAAUAAAAAAACCGCCGCCUGGUCAGGCGGCGGUUCUUAAUGCUUAUUUU
UUAGCAGAAUCUGCGGCUUUCGCAUCAGCUUCC
.........(((((((((((....))))))))))).....((((........))))(((.(((..((....))..))).))). (-25.10)

Length sequence:

83

Length match:

82