gi_545778205_gb_U000_528

cmsearch-Rfam

Family :

rsmX

Id:

RF02144

Type:

Gene;

Dominio:

Eukaryota; Bacteria;

Ontology:

Not found

Description:

not description

Score:

24.3

E-value:

0.0018

From sequence:

3439666

To sequence:

3439576

Alignments:

                                           v       v       v            vvvvv vv                            vv v NC
                               :::::<<<<<<<<<_____>>>>>>>>><<<<______>>>>(((((((<<<_____>>>,,<<<<<_____>>>>>)))) CS
               RF02144       1 AacAACcggaGcgcAGGAagcgCuccgGGauCAaGGAaGauCGaCCaucGCcaaGaagGCuaccgaCAGGAaGucgggauG 81     
                                ACA C::     C GG  G     ::G :UCA     GA:+       GC: A + :GCU+C:GA  G AA UC:G+A G
  gi_545778205_gb_U000 3439666 UACAUCGA----GCUGGUUGA----UCG-UUCAGA---GAAA-------GCAGAAGCUGCUGCAGA--GUAA-UCUGAA-G 3439609
                               *****865....345555543....567.555543...5555.......****************9..7888.****44.4 PP

                               vvv                               NC
                               ))),,,,,,,<<<<<<<<____>>>>>>>>::: CS
               RF02144      82 GuCuUggaAAaaaCCCGCUUcGGCGGGuuuUUU 114    
                                ++   +AAAAAACCCGC  CGGCGGGUUUUUU
  gi_545778205_gb_U000 3439608 CAACGUAAAAAAACCCGCCCCGGCGGGUUUUUU 3439576
                               45567788999********************** PP

>>

RNAfold

>gi_545778205_gb_U000_528
CUACGGGUAUAAAAAAACCCGCCGGGGCGGGUUUUUUUACGUUGCUUCAG
AUUACUCUGCAGCAGCUUCUGCUUUCUCUGAACGAUCAACCAGCUCGAUG
UAAGCCAUCGGCGC
(....)((.(((((((((((((....))))))))))))).((((((.((((....)))).))))))............(((....)))....((.(((((.....))))))))) (-33.50)

Length sequence:

114

Length match:

89