gi_545778205_gb_U000_508

cmsearch-Rfam

Family :

STnc100

Id:

RF02076

Type:

Gene;

Dominio:

Eukaryota; Bacteria; Viruses;

Ontology:

Not found

Description:

not description

Score:

18.9

E-value:

0.01

From sequence:

1286475

To sequence:

1286576

Alignments:

                                            v                   v                v                      v        NC
                               :::::::::::::(((--------~~~~~~~)))-------<<<<-----<<<<<<<<<______>>>>>>>>>----->> CS
               RF02076       1 uCaGauaGAauAUguGUUAaAAaA*[130]*CacAaAauaggcauaaauCaAaGCCCCuCUcCGgaGGGGCuUuUUUauau 204    
                                C G+U GA+UAU :G  A   AA       C: A  +U +G  :A A   A :CCC :CU+CGG: GGG: U UUUAU: 
  gi_545778205_gb_U000 1286475 ACCGGUGGAGUAUCUGACACGUAA*[ 29]*CGAA-UUUUAGUUCACA--UAGACCCUGCUUCGGCGGGGUUUUUUUAUGG 1286574
                               *************99876666555....7..3333.233446666554..6789*************************** PP

                                  NC
                               >> CS
               RF02076     205 gc 206    
                                C
  gi_545778205_gb_U000 1286575 GC 1286576
                               ** PP

>>

RNAfold

>gi_545778205_gb_U000_508
GACGUUAUUCCUGCUGUUCCCGUUCUCGCGUCUGAUACACAUCUGGAGCG
UACCGGUGGAGUAUCUGACACGUAAGUACCAGCUGGUGCGCGCUCGUCAC
UAAGCGAAUUUUAGUUCACAUAGACCCUGCUUCGGCGGGGUUUUUUUAUG
GGCACGGUGCGGGGUGAGUUGUCGGAUGCGCUUCGCUUAUCCGACCUACA
GGGGA
(((.(((((((((((((.(((((...((.(((.(((((.((.((((......))))))..))))).))).))...(((((....))))).((((........))))...............(((((((((....)))))))))....))))).)))))).))))))))))((((((((.((...)).)))))))).......... (-68.90)

Length sequence:

205

Length match:

100