gi_545778205_gb_U000_532

cmsearch-Rfam

Family :

rsmX

Id:

RF02144

Type:

Gene;

Dominio:

Eukaryota; Bacteria;

Ontology:

Not found

Description:

not description

Score:

22.9

E-value:

0.0044

From sequence:

3270260

To sequence:

3270182

Alignments:

                                                    vvvv      vvvvvvvv                  vvvv                     NC
                               :::::<<<<<~~~~~~>>>>><<<<______>>>>(((((((~~~~~~~~~~~~))))))),,,,,,,<<<<<<<<____> CS
               RF02144       1 AacAACcgga*[13]*uccgGGauCAaGGAaGauCGaCCauc*[11]**[17]*gauGGuCuUggaAAaaaCCCGCUUcGG 104    
                               AA  AC:G::      ::C:G+A C                                G+U U  G AAAAACCCGCUUCGG
  gi_545778205_gb_U000 3270260 AAUGACUGUC*[ 3]*GACAGAACC-----------------*[15]**[ 8]*---GAUUUACGUAAAAACCCGCUUCGG 3270192
                               *******986...7..688996655....................5.....8.....66679999**************** PP

                                          NC
                               >>>>>>>::: CS
               RF02144     105 CGGGuuuUUU 114    
                               CGGGUUUUU 
  gi_545778205_gb_U000 3270191 CGGGUUUUUG 3270182
                               ********** PP

>>

RNAfold

>gi_545778205_gb_U000_532
UUCUGCCCCUCCAAAAGCAAAAACCCGCCGAAGCGGGUUUUUACGUAAAU
CAGGUGAAACUGACCGAUAAGCCGGGUUCUGUCGUGGACAGUCAUUCAUC
UAGGCCAGCAAUCG
((..(((...........((((((((((....)))))))))).......((((......))))(((......)))...(((((...)))))...........))).))(....) (-24.90)

Length sequence:

114

Length match:

77