gi_545778205_gb_U000_492

cmsearch-Rfam

Family :

STnc370

Id:

RF02064

Type:

Gene; sRNA;

Dominio:

Bacteria;

Ontology:

Not found

Description:

not description

Score:

29.2

E-value:

0.0036

From sequence:

3439541

To sequence:

3439607

Alignments:

                                   v  vv        vv  v                                                  NC
                               :::<<<<<<________>>>>>>---------------<<<<<<<<<<______>>>>>>>>>>::::::: CS
               RF02064       1 AAUuAuuagCGAAUcaucuaaUacUAUUUaaGuuAUAAAAAAACCUGCCCGAAAGCAGGUUUUUuUUUAuU 71     
                               A  : ::++ GA+ + U  :: :+UA U   G+UAUAAAAAAACC:GCC G  +GC:GGUUUUUUU   UU
  gi_545778205_gb_U000 3439541 AGCUAUUGUAGAUAAGU--GGGGAUACUACGGGUAUAAAAAAACCCGCCGG--GGCGGGUUUUUUUACGUU 3439607
                               ****9998777765544..344556666689*****************966..4***************** PP

>>

RNAfold

>gi_545778205_gb_U000_492
CAGCUAUUGUAGAUAAGUGGGGAUACUACGGGUAUAAAAAAACCCGCCGG
GGCGGGUUUUUUUACGUUGC
(..(((...)))....((((.....)))).)((((((((((((((((....)))))))))))))...))) (-16.60)

Length sequence:

70

Length match:

65