gi_545778205_gb_U000_537

cmsearch-Rfam

Family :

HPnc0260

Id:

RF02194

Type:

Gene; antisense;

Dominio:

Eukaryota; Bacteria;

Ontology:

Not found

Description:

not description

Score:

98.2

E-value:

2.5e-17

From sequence:

1746716

To sequence:

1746554

Alignments:

                                                                                                                 NC
                               :::::::::::::::::::::::<<<---<<<<______>>>>--->>>.....,,..,,,,,,,,,,,,,,<<<._____ CS
               RF02194       1 aGuAuuAAAguUUuaAaguacuuuaaAAucguuaUuugAaacguGuuua.....aU..AaaUUUUuAaguaAuuU.AuAuA 73     
                               +GUA  AAAGUU   A+++   UU::  U::U:AU++  :A::+G+::A         AA+ UUUUAA  +AU:: AUA A
  gi_545778205_gb_U000 1746716 UGUAACAAAGUUGCCAUAGCGAUUCUCCUUCUGAUAACGCAUACGAAGAcagug--uaAAUCUUUUAACGUAUUGgAUACA 1746638
                               *************************************************76665..55999*******99*********** PP

                                                                                                                 NC
                               ____>>>----.---------------------------------<<<<<<---<<-<<<<_______>>>>>>->>>>>> CS
               RF02194      74 GAugAaaAAuu.uGaAAAAAaUgaGAAaUagAAaugaAgagAaAAUGGuGGcCcCGAgUGGACUCGAACCAcCGACCaCUA 153    
                               GA  ::AAA++ +G  AAAAA GAGAA +  A AU+AAGA+AA  U:G:G:+ CCGAGUGGACUCGAACCACCGA:C:C:A
  gi_545778205_gb_U000 1746637 GAGAAGAAACAgAGGGAAAAAGGAGAAGACCAGAUUAAGAAAAUCUGGUGCGUCCGAGUGGACUCGAACCACCGACCCCCA 1746557
                               *******99998666666678************************************************************ PP

                                   NC
                               ::: CS
               RF02194     154 CCA 156    
                               CCA
  gi_545778205_gb_U000 1746556 CCA 1746554
                               *** PP

>>

RNAfold

>gi_545778205_gb_U000_537
GGUGGGGGUCGGUGGUUCGAGUCCACUCGGACGCACCAGAUUUUCUUAAU
CUGGUCUUCUCCUUUUUCCCUCUGUUUCUUCUCUGUAUCCAAUACGUUAA
AAGAUUUACACUGUCUUCGUAUGCGUUAUCAGAAGGAGAAUCGCUAUGGC
AACUUUGUUACA
((.(((((..((..(((((((....)))))))..((((((((.....)))))))).....))...)))))))((.((((((((((((....(((((....(((((.......))))))))))....)).))).)))))))......(((((....))))))) (-37.30)

Length sequence:

162

Length match:

161