gi_545778205_gb_U000_538

cmsearch-Rfam

Family :

HPnc0260

Id:

RF02194

Type:

Gene; antisense;

Dominio:

Eukaryota; Bacteria;

Ontology:

Not found

Description:

not description

Score:

34.3

E-value:

0.0018

From sequence:

1746512

To sequence:

1746476

Alignments:

                                          v                v         NC
                               -<<<<<<---<<-<<<<_______>>>>>>->>>>>> CS
               RF02194     117 AUGGuGGcCcCGAgUGGACUCGAACCAcCGACCaCUA 153    
                               AU:G:G:+  C A:UGGACUCGAACCA: GA:C:C:A
  gi_545778205_gb_U000 1746512 AUGGUGCGUUCAAUUGGACUCGAACCAACGACCCCCA 1746476
                               ************************************* PP

>>

RNAfold

>gi_545778205_gb_U000_538
GUUGUCACCUACAACGUUGCGUUCAUAGCUCAGUUGGUUAGAGCACCACC
UUGACAUGGUGGGGGUCGUUGGUUCGAGUCCAAUUGAACGCACCAUCCUG
CGUCCGUAGCUCAGUUGGUUAGAGCACCACCUUGACAUGGUGGGGGUCGG
UGGUUC
(((((.....)))))(.((((((((..((((.........)))).(((((.......)))))((((((......))).)))...))))))))(((..(((.((.....)).))).)))...((.(((((((((.((...)).))))).)))).))) (-47.60)

Length sequence:

156

Length match:

35