gi_545778205_gb_U000_506

cmsearch-Rfam

Family :

STnc100

Id:

RF02076

Type:

Gene;

Dominio:

Eukaryota; Bacteria; Viruses;

Ontology:

Not found

Description:

not description

Score:

21.2

E-value:

0.0021

From sequence:

2282761

To sequence:

2282853

Alignments:

                                                                                                                 NC
                               :::::::::::::(((-------------((((((((,,,,~~~~~~~~~~~~~~~~~~))))))))------)))----- CS
               RF02076       1 uCaGauaGAauAUguGUUAaAAaAAUuuuGCauGGUGAAUC*[16]**[32]**[51]*CACCauGCAauAuaCacAaAau 162    
                                CA A+ GAA  UG::  A A                                                    ::C+ AAU
  gi_545778205_gb_U000 2282761 ACAAACCGAAGCUGCAGCACAUCG-----------------*[ 6]**[ 3]**[ 9]*--------------UGCUGAAU 2282810
                               ***************977766555....................6.....9.....8................99****** PP

                                                                             NC
                               --<<<<-----<<<<<<<<<______>>>>>>>>>.----->>>> CS
               RF02076     163 aggcauaaauCaAaGCCCCuCUcCGgaGGGGCuUu.UUUauaugc 206    
                               A+G :: AA  AAA:CCCC:CUCCGG:GGGG:UUU U UAU:: C
  gi_545778205_gb_U000 2282811 AAGUUGUAA--AAAACCCCGCUCCGGCGGGGUUUUuUGUAUCUGC 2282853
                               ****99765..99*******************999455899**** PP

>>

RNAfold

>gi_545778205_gb_U000_506
CGUUGUUGACGGUAAAGAAAUCAAAGUUAAAGCUCAGGACGUACAGCGUC
ACCCGUACAAACCGAAGCUGCAGCACAUCGACUUCGUUCGCGCUUAAUUG
CUGAAUAAGUUGUAAAAAACCCCGCUCCGGCGGGGUUUUUUGUAUCUGCA
GAUUAUGCCUGAUUACGGUAUUGCUAUUUUUUGCAGGCCAGAUAAGGCGU
UCACGC
((((...))))((...........(((....)))...(((((...))))).................((((((.....((((((.(((((.((......)))))))))))))(((((((((((((....)))))))))))))...))))))...((((((.(((..(((..(((........))).))).))).))))))....)) (-60.50)

Length sequence:

206

Length match:

91