gi_545778205_gb_U000_510

cmsearch-Rfam

Family :

STnc180

Id:

RF02079

Type:

Gene; sRNA;

Dominio:

Eukaryota; Bacteria;

Ontology:

Not found

Description:

not description

Score:

185.4

E-value:

3.5e-50

From sequence:

1335499

To sequence:

1335701

Alignments:

                                                                                                                 NC
                               :::::::::<<<<<---<<---------<<<<<_____>>>>>----------------->>---->>>>>,,,,,,,,,, CS
               RF02079       1 UuaaUuAAUACACCaCAgcAAUAAaGagcuGAGuAuAuCUCagaAcagaaaaUaAAAAaaguguugGGUGUaGcCuAUGAa 81     
                                 + UUAAUACACC+CAGCAAUAA    :UGAG  UAUCUCA:  CA+AAAAUAA AA  GU ++GGGUGUAGCCUAUGA+
  gi_545778205_gb_U000 1335499 GCUUUUAAUACACCGCAGCAAUAACAGCUUGAG-UUAUCUCAA--CACAAAAUAAUAACCGUUAAGGGUGUAGCCUAUGAU 1335576
                               *********************************.99*******..6678889***************************** PP

                                                             v                 v              v               v  NC
                               ,,,,,,,,,,,,,,,,,,,,,<<<--<-<<<<<<<_________>>>>>>>->------->>><<<-<<_____>>->>>, CS
               RF02079      82 aAauacAAAuAUgAAAUAuUGGuCAUGGAucGGcGCgUUUuCagUgUCgaUuCUgUUCUGGgCcgAgCUaAUCUGGaUcgu 162    
                                AA ACAAAUAUGAAAUAUUGGUC UGGAU GGCGCGUUUUC+ UGUC AU CU UUCUGGGC GA+CU+ UCUGGAUC U
  gi_545778205_gb_U000 1335577 CAACACAAAUAUGAAAUAUUGGUCCUGGAUGGGCGCGUUUUCUCUGUCGAUGCUCUUCUGGGCCGAACUCCUCUGGAUCAU 1335657
                               ********************************************************************************* PP

                                               v                           v           NC
                               ,,,,,,,,,,,,,,,,<<<<<<<<<<<_______>>>>>>>>>>>:::::::::: CS
               RF02079     163 CuuuaaCUaAUCacaAaAcCCCGcuGguGcauuacCagCGGGgUuuUUcaUuUua 217    
                                ++U+ACU+AUC C   ACCCCGC:G         C:GCGGGGU U UCAUUU +
  gi_545778205_gb_U000 1335658 UACUCACUGAUC-CUUGACCCCGCUG---------CGGCGGGGU-UGUCAUUUGC 1335701
                               ************.99***********.........*********.59******** PP

>>

RNAfold

>gi_545778205_gb_U000_510
UAAAGGGCUUUUAAUACACCGCAGCAAUAACAGCUUGAGUUAUCUCAACA
CAAAAUAAUAACCGUUAAGGGUGUAGCCUAUGAUCAACACAAAUAUGAAA
UAUUGGUCCUGGAUGGGCGCGUUUUCUCUGUCGAUGCUCUUCUGGGCCGA
ACUCCUCUGGAUCAUUACUCACUGAUCCUUGACCCCGCUGCGGCGGGGUU
GUCAUUUGCUUUGCCA
.....(((......((((((...((.......))(((((....))))).....................))))))((..(((((..................(((((((.(((.(((((((..........)).))))).))))))))))........((((((........))))))..((((((((....)))))))))))))..))...))). (-55.60)

Length sequence:

216

Length match:

201