gi_545778205_gb_U000_518

cmsearch-Rfam

Family :

IS009

Id:

RF02111

Type:

Gene;

Dominio:

Eukaryota; Bacteria; Viruses;

Ontology:

Not found

Description:

not description

Score:

214.3

E-value:

3.1e-59

From sequence:

581856

To sequence:

582054

Alignments:

                                                                                                                  NC
                              :::::::<--<---<-<_________>->---->-->-------------------------(((--((,,,<-<<--<<<<_ CS
               RF02111      1 UGAAaGAcaaagAaGCggAAAaACaGcuCCggauuugagaGguaaAAaaAaCaaaaAAcAuuCuGAUGCAGauAGCCAGUgAG 83    
                              UGAAAGA: +AGAAGC:GAAAAAC+G:UCCGGAUU+:+GAGG+++AA+AAACAAAAAACA++C:GAUGCAG+UAGCCAGU:AG
  gi_545778205_gb_U000 581856 UGAAAGAUGCAGAAGCAGAAAAACUGUUCCGGAUUCGGGAGGCGGAAGAAACAAAAAACAGCCUGAUGCAGGUAGCCAGUGAG 581938
                              *********************************************************************************** PP

                                                                                                                  NC
                              ____>>>>>>->,<<<-<<<<_______>>>>>>>,,,,))--)))::::::::::::::::::::::::::::::::::::: CS
               RF02111     84 uAUAUcGCGCuaCUuCAgGAUGcUGUAGAUCcGgAgAaCGCaACaGAgGAAGAaaCaUugUUGCUGGaAgcaUGGAAgAAGUA 166   
                              +AUAU:GCGC+ACUUCA:GAUGCUGUAGAUC:GGA+A+CGCAAC:GAGGAAGAAAC+U++UUGCUGGAAGC UGGAA+AA UA
  gi_545778205_gb_U000 581939 CAUAUUGCGCCACUUCAGGAUGCUGUAGAUCUGGAAAUCGCAACGGAGGAAGAAACCUCAUUGCUGGAAGCCUGGAAAAAAUA 582021
                              *********************************************************************************** PP

                                                                NC
                              ::::::::::::::::::::::::::::::::: CS
               RF02111    167 UCGGGUuUUGuUaaaCCugAAaAAugaAgCaaC 199   
                              UCGGGU+UUG+U+AACC++ ++ AU+ A CAAC
  gi_545778205_gb_U000 582022 UCGGGUGUUGCUGAACCGUGUUGAUACAUCAAC 582054
                              ********************************* PP

>>

RNAfold

>gi_545778205_gb_U000_518
GAAAGAUGCAGAAGCAGAAAAACUGUUCCGGAUUCGGGAGGCGGAAGAAA
CAAAAAACAGCCUGAUGCAGGUAGCCAGUGAGCAUAUUGCGCCACUUCAG
GAUGCUGUAGAUCUGGAAAUCGCAACGGAGGAAGAAACCUCAUUGCUGGA
AGCCUGGAAAAAAUAUCGGGUGUUGCUGAACCGUGUUGAUACAUCAAC
....((((....(((((.....)))))(((....)))((.((((.((.(((........(((((((((((((..(((((((.....((((((((((.(((....))).))...)))....)))))..((((......)))).)))))))..))))).......))))))))))).))...)))).))....))))... (-46.30)

Length sequence:

198

Length match:

197