gi_545778205_gb_U000_539

cmsearch-Rfam

Family :

HPnc0260

Id:

RF02194

Type:

Gene; antisense;

Dominio:

Eukaryota; Bacteria;

Ontology:

Not found

Description:

not description

Score:

33.9

E-value:

0.0021

From sequence:

2286393

To sequence:

2286249

Alignments:

                                                                                                                 NC
                               :::::::::::::::::::::::<<<---<<<<______>>>>--->>>,,,,,,,,,,,,,,,,<<<._________>>> CS
               RF02194       1 aGuAuuAAAguUUuaAaguacuuuaaAAucguuaUuugAaacguGuuuaaUAaaUUUUuAaguaAuuU.AuAuAGAugAaa 80     
                                  AU+A AG++       A+ +::A    GU:AU UG :AC    U::+U     U  AA UAAUU: A AUA A  :AA
  gi_545778205_gb_U000 2286393 CUGAUAACAGAAA------AUAAACAGGCUGUGAUGUGUCACGGUCUGUUU----AUCGAAUUAAUUGcAGAUAUAAAAAA 2286323
                               *********9998......55667777777777899998777777777666....66777788888888888887777777 PP

                                                                           v                          v        NC
                               -----------..------------------------.--<<<<<<---<<-<<<<_______>>>>>>->>>>>>::: CS
               RF02194      81 AAuuuGaAAAA..AaUgaGAAaUagAAaugaAgagAa.AAUGGuGGcCcCGAgUGGACUCGAACCAcCGACCaCUACCA 156    
                               A +++    AA    U     +U+   +U   G GA+   ::G: G+C+CGAG:GGA U+GAACC:CCGAC :C:: CA
  gi_545778205_gb_U000 2286322 ACCAACCGUAAgg-GU--UGGUUU--UUUCUUGGGAUuUUUGGUCGGCACGAGAGGAUUUGAACCUCCGACCCCCGACA 2286249
                               6555555556642.22..222222..23344455566699*************************************** PP

>>

RNAfold

>gi_545778205_gb_U000_539
UGGGGUGUCGGGGGUCGGAGGUUCAAAUCCUCUCGUGCCGACCAAAAAUC
CCAAGAAAAAACCAACCCUUACGGUUGGUUUUUUUAUAUCUGCAAUUAAU
UCGAUAAACAGACCGUGACACAUCACAGCCUGUUUAUUUUCUGUUAUCAG
AACGUC
(((((((((((....((((((.......)))).))..))))).....)))))).(((((((((((((.....))))))))))))).................(((((((((.(.((((....)))).).)))))))))(((((....))))).... (-46.50)

Length sequence:

156

Length match:

143