gi_545778205_gb_U000_520

cmsearch-Rfam

Family :

IS009

Id:

RF02111

Type:

Gene;

Dominio:

Eukaryota; Bacteria; Viruses;

Ontology:

Not found

Description:

not description

Score:

203.8

E-value:

3.4e-56

From sequence:

1432754

To sequence:

1432952

Alignments:

                                                                                                                 NC
                               :::::::<--<---<-<_________>->---->-->-------------------------(((--((,,,<-<<--<<< CS
               RF02111       1 UGAAaGAcaaagAaGCggAAAaACaGcuCCggauuugagaGguaaAAaaAaCaaaaAAcAuuCuGAUGCAGauAGCCAGUg 81     
                               UGAA GA:A+:GAAGC:GAAAAAC+G:UCCGGA:++:+GAGG+++AA+AAACAAAAAACA +C:GAUGCAG+:AGCCAGU:
  gi_545778205_gb_U000 1432754 UGAAGGAUACGGAAGCAGAAAAACUGUUCCGGAUCCGGGAGGCGGAAGAAACAAAAAACAACCUGAUGCAGGUAGCCAGUG 1432834
                               ********************************************************************************* PP

                                                                                                                 NC
                               <_____>>>>>>->,<<<-<<<<_______>>>>>>>,,,,))--)))::::::::::::::::::::::::::::::::: CS
               RF02111      82 AGuAUAUcGCGCuaCUuCAgGAUGcUGUAGAUCcGgAgAaCGCaACaGAgGAAGAaaCaUugUUGCUGGaAgcaUGGAAgA 162    
                               AG+AUAU:GCGC+:CUUCA:GAUGCUG AGAUC:GGA+A+ GCAAC:GAGGAAGAAA +U+GUUGCUGGAAGCAUGGAA+A
  gi_545778205_gb_U000 1432835 AGCAUAUUGCGCCGCUUCAGGAUGCUGCAGAUCUGGAAAUUGCAACGGAGGAAGAAAUCUCGUUGCUGGAAGCAUGGAAAA 1432915
                               ********************************************************************************* PP

                                                                     NC
                               ::::::::::::::::::::::::::::::::::::: CS
               RF02111     163 AGUAUCGGGUuUUGuUaaaCCugAAaAAugaAgCaaC 199    
                               AGUAUCGGGU UUG+U+AACC++ ++ AU+   CAAC
  gi_545778205_gb_U000 1432916 AGUAUCGGGUAUUGCUGAACCGUGUUGAUACGUCAAC 1432952
                               ************************************* PP

>>

RNAfold

>gi_545778205_gb_U000_520
GAAGGAUACGGAAGCAGAAAAACUGUUCCGGAUCCGGGAGGCGGAAGAAA
CAAAAAACAACCUGAUGCAGGUAGCCAGUGAGCAUAUUGCGCCGCUUCAG
GAUGCUGCAGAUCUGGAAAUUGCAACGGAGGAAGAAAUCUCGUUGCUGGA
AGCAUGGAAAAAGUAUCGGGUAUUGCUGAACCGUGUUGAUACGUCAAC
...(((..(((((.(((.....))))))))..))).(..((((................(((((...)))))..(((((..(((....(((((......)).))))))..).)))).....((((((((........)).))))))....(((((((....((((........))))...)))))))....))))..) (-50.20)

Length sequence:

198

Length match:

197