gi_545778205_gb_U000_504

cmsearch-Rfam

Family :

STnc100

Id:

RF02076

Type:

Gene;

Dominio:

Eukaryota; Bacteria; Viruses;

Ontology:

Not found

Description:

not description

Score:

37.0

E-value:

4.6e-08

From sequence:

1649446

To sequence:

1649586

Alignments:

                                                      vv        vv                                               NC
                               ---------((((((((,,,,<<<<<______>>>>>,,,,,,<<<____________________>>>,,<<<_...... CS
               RF02076      21 AAaAAUuuuGCauGGUGAAUCCCCCuGuGCGGaGGGGCgAcUgaugaaaaauguuuauuugauuAUcaugagCgA...... 95     
                               AA   U U :::: GUGAAU C   UG+GCG A   G +AC G ::AAA  + +  A+ +G+ U  :: G+G :       
  gi_545778205_gb_U000 1649446 AAUUUUGUGAUGUGGUGAAUGCGGCUGAGCGCACGCGGAACAGUUAAAACCAAA--AACAGUGUUAUGGGUGGAUucucug 1649524
                               9999999*******************************9999988766554444..5555555555777777776777777 PP

                                                                                              NC
                               ..>>><<<<-<<<_._________>>>->>>>,<<<<<_____>>>>>))))))))------ CS
               RF02076      96 ..cGcGgGuUCaGu.guaaucAgaCuGAaCuCACCGGGAGGCACCCGGCACCauGCAauAua 154    
                                 : CGG::U:A:U GU A C G+:U:A::UCACC GGAGGCACC GGCAC :::: A+A A
  gi_545778205_gb_U000 1649525 uaUCCGGCGUUAAUuGUUAACUGGUUAACGUCACCUGGAGGCACCAGGCACUGCAUCACAAA 1649586
                               7799*********72567777799************************************** PP

>>

RNAfold

>gi_545778205_gb_U000_504
UCCGUGACUGCUCUGCCGCCCUUUUUAAAGUGAAUUUUGUGAUGUGGUGA
AUGCGGCUGAGCGCACGCGGAACAGUUAAAACCAAAAACAGUGUUAUGGG
UGGAUUCUCUGUAUCCGGCGUUAAUUGUUAACUGGUUAACGUCACCUGGA
GGCACCAGGCACUGCAUCACAAAAUUCAUUGUUGAGGACGCGAUAAUGAA
AACGUU
..((((...((......))((((.....(((((((((((((((((((((..((((......))))..((((((((......(((....((......))..))).....)))).))))(((((((((.......)))))))))..(((((.....))))))))))))))))))))))))))...)))).))))..((((....)))) (-64.00)

Length sequence:

206

Length match:

139