gi_545778205_gb_U000_513

cmsearch-Rfam

Family :

STnc540

Id:

RF02082

Type:

Gene; sRNA;

Dominio:

Bacteria;

Ontology:

Not found

Description:

not description

Score:

65.4

E-value:

3e-14

From sequence:

1795311

To sequence:

1795153

Alignments:

                                                               v                                                 NC
                               ::::::::((((,,,~~~~~~~~~~~~,))))<<<<<<---.....-----------<<<<<<<<<<<___>>>>>>>>>> CS
               RF02082       1 UCAGAUCCaGgCAUA*[16]**[59]*AGcCuGaaaGaUGA.....CgCGUAUAACUaaaaaGGCCGCAuUGCGGCCuuuu 139    
                               UCAGA CC:GGCA A             GCC: AAAGA GA     C   U UAACUAAAAAGGCCGC  UGCGGCCUUUU
  gi_545778205_gb_U000 1795311 UCAGACCCGGGCAGA*[15]**[13]*-GCCC-AAAGACGAguaauCUGAUCUAACUAAAAAGGCCGCUCUGCGGCCUUUU 1795217
                               ************965...9.....*...****.77899887222223345678**************************** PP

                                     v                                                          NC
                               >>>>>>>::::::::::::::::::::::::::.:::::::::::::::::::::::::::::: CS
               RF02082     140 uuCuuuCAAGUAaagaAUAcccAccGUAAAAUc.AcGcUAccUcUUUUcAGcUGAAUGGAUAAc 202    
                               UUCUUU  A U + GAA A  CACCGUAAAAUC ACGC A   C  UUCAGC GAA GGAUA C
  gi_545778205_gb_U000 1795216 UUCUUUUCACUGUCGAAGAGUCACCGUAAAAUCaACGCCAUGACACUUCAGCAGAACGGAUACC 1795153
                               *******************************983589*************************** PP

>>

RNAfold

>gi_545778205_gb_U000_513
UUGGCGGGCAAGUGUCAGCAUGGUAUCCGUUCUGCUGAAGUGUCAUGGCG
UUGAUUUUACGGUGACUCUUCGACAGUGAAAAGAAAAAAGGCCGCAGAGC
GGCCUUUUUAGUUAGAUCAGAUUACUCGUCUUUGGGCGAAGCGUUUUCGA
CCCGGCUUUUUAACUUCUGCCCGGGUCUGAAGGUCACCACGCGCCGUGCU
GU
...((......))..(((((((((.......(((.(((((.(((((..(((.......)))))))).))))).)))(((.((..(((((((((((...)))))))))))..))...)))......(((((....))))).((((((((((((((((............).))))))).))))......))))))))))))). (-67.20)

Length sequence:

202

Length match:

157