gi_545778205_gb_U000_519

cmsearch-Rfam

Family :

IS009

Id:

RF02111

Type:

Gene;

Dominio:

Eukaryota; Bacteria; Viruses;

Ontology:

Not found

Description:

not description

Score:

207.1

E-value:

3.7e-57

From sequence:

303611

To sequence:

303810

Alignments:

                                                                                                                  NC
                              :::::::<--<--.-<-<_________>->---->-->-------------..------------(((--((,,,<-<<--<< CS
               RF02111      1 UGAAaGAcaaagA.aGCggAAAaACaGcuCCggauuugagaGguaaAAaaA..aCaaaaAAcAuuCuGAUGCAGauAGCCAGU 80    
                              UGAA+GA:AAA+A +GCG+AAA+ACAGC CC+ +UUU:++ G+UAAAAA+A  +C++++ A+AUUCUGAUGCAGAUAG:CAGU
  gi_545778205_gb_U000 303611 UGAAUGAUAAAAAuGGCGCAAAUACAGCGCCAUUUUUAUAGGUUAAAAACAuuGCUUUUUAUAUUCUGAUGCAGAUAGUCAGU 303693
                              *********************************************************************************** PP

                                                                                                                  NC
                              <<_____>>>>>>->,<<<-<<<<_______>>>>>>>,,,,))--))):::::::::::::::::::::::::::::::::: CS
               RF02111     81 gAGuAUAUcGCGCuaCUuCAgGAUGcUGUAGAUCcGgAgAaCGCaACaGAgGAAGAaaCaUugUUGCUGGaAgcaUGGAAgAA 163   
                              GAGUAUAUCGC:CUACU:CAGGAUG+UGUAGAUCCG:AGAACGC+ACAGA+GA GA++CAUUGUUGCUGG A+ AU+GAAGAA
  gi_545778205_gb_U000 303694 GAGUAUAUCGCGCUACUUCAGGAUGAUGUAGAUCCGAAGAACGCUACAGAAGA-GAGGCAUUGUUGCUGGCAA-AUAGAAGAA 303774
                              *****************************************************.*******************.********* PP

                                                                   NC
                              :::::::::::::::::::::::::::::::::::: CS
               RF02111    164 GUAUCGGGUuUUGuUaaaCCugAAaAAugaAgCaaC 199   
                              GUAUCGGGUUUUGUUA +CCUGAAAAA+GAAGC++C
  gi_545778205_gb_U000 303775 GUAUCGGGUUUUGUUACCCCUGAAAAACGAAGCCCC 303810
                              ************************************ PP

>>

RNAfold

>gi_545778205_gb_U000_519
GAAUGAUAAAAAUGGCGCAAAUACAGCGCCAUUUUUAUAGGUUAAAAACA
UUGCUUUUUAUAUUCUGAUGCAGAUAGUCAGUGAGUAUAUCGCGCUACUU
CAGGAUGAUGUAGAUCCGAAGAACGCUACAGAAGAGAGGCAUUGUUGCUG
GCAAAUAGAAGAAGUAUCGGGUUUUGUUACCCCUGAAAAACGAAGCCCC
((...(((((((((((((.......)))))))))))))..((((..((((.((((((((...(((((..((...((((..((((.....))))))))((((.((((.......))))))))...))..))))))))))))).))))..))))..............))((((((((((..........)))))))))). (-54.50)

Length sequence:

199

Length match:

198