gi_545778205_gb_U000_505

cmsearch-Rfam

Family :

STnc100

Id:

RF02076

Type:

Gene;

Dominio:

Eukaryota; Bacteria; Viruses;

Ontology:

Not found

Description:

not description

Score:

29.2

E-value:

9.1e-06

From sequence:

1418398

To sequence:

1418256

Alignments:

                                                      vv        vv                                           v   NC
                               --------((.((((((,,,,<<<<<______>>>>>,,,,,,<<<____________________.....>>>,,<<<_. CS
               RF02076      22 AaAAUuuuGC.auGGUGAAUCCCCCuGuGCGGaGGGGCgAcUgaugaaaaauguuuauuugauuAU.....caugagCgA. 95     
                               AA  UU UG  ::GGUGAAU C   U +GCG A   G  AC G ::AAA    U U++ U  UUAU     :: G+G  A 
  gi_545778205_gb_U000 1418398 AAUUUUGUGAuGCGGUGAAUGCGGCUAAGCGCACGUGGCACAGUUAAAAGUCAUGUUAGUCCUUAUugguuUGGGUGGGAa 1418318
                               77788889988**********************9999999*********99999888888888777788888888888888 PP

                                v                              v             v                NC
                               .>>><<<<-<<<_._________>>>->>>>,<<<<<_____>>>>>)))))).))------ CS
               RF02076      96 .cGcGgGuUCaGu.guaaucAgaCuGAaCuCACCGGGAGGCACCCGGCACCau.GCAauAua 154    
                                  CG::U :A:U GU A C G+:U: A::CA C GGAGGCACC G CACC::  CAA+A A
  gi_545778205_gb_U000 1418317 aGCCGACUGUAAUuGUUAACUGGUUGCAGUCACCUGGAGGCACCAGACACCGCaUCAACAAA 1418256
                               999******999626677777999*****************************8899***** PP

>>

RNAfold

>gi_545778205_gb_U000_505
AUCAUAAUUAUCUCCAUUUUUACAAAUGAACUUUGUUGAUGCGGUGUCUG
GUGCCUCCAGGUGACUGCAACCAGUUAACAAUUACAGUCGGCUUUCCCAC
CCAAACCAAUAAGGACUAACAUGACUUUUAACUGUGCCACGUGCGCUUAG
CCGCAUUCACCGCAUCACAAAAUUCACUUUAAAAAGGGCGGACAUCAGCC
GAACUU
............(((.((((((.((.((((.(((((.(((((((((.((((.....))))(((...(((..(((((((.......(((((....(((...............)))......))))).)))))))))))))(((((......))))).)))))))))))))).)))).)))))))))))(((.(....))))..... (-42.20)

Length sequence:

206

Length match:

141