gi_545778205_gb_U000_534

cmsearch-Rfam

Family :

rsmX

Id:

RF02144

Type:

Gene;

Dominio:

Eukaryota; Bacteria;

Ontology:

Not found

Description:

not description

Score:

22.4

E-value:

0.0059

From sequence:

3982758

To sequence:

3982840

Alignments:

                                                                v  v     v        v                              NC
                               :::::<<<<<~~~~~~>>>>>~~~~~~(((((((<<<_____>>>~~~~~~))))))),,,,,,,<<<<<<<<____>>>> CS
               RF02144       1 AacAACcgga*[13]*uccgG*[14]*GaCCaucGCcaaGaagGC*[17]*gauGGuCuUggaAAaaaCCCGCUUcGGCGG 107    
                                 CAAC:GG:      :CC:G      G::C:: G:   GAA :C       ::G::C+      AA:CCCGCUUCGGCGG
  gi_545778205_gb_U000 3982758 CGCAACUGGU*[ 5]*ACCAG*[ 2]*GGUCGGAGGUUCGAAUCC*[ 6]*GCCGACCAAUUUUGAACCCCGCUUCGGCGG 3982833
                               ******9986...4..57888...3..888887777777777777...8..67888999999******************* PP

                                       NC
                               >>>>::: CS
               RF02144     108 GuuuUUU 114    
                               G:UUUUU
  gi_545778205_gb_U000 3982834 GGUUUUU 3982840
                               ******* PP

>>

RNAfold

>gi_545778205_gb_U000_534
AGCGCAGCUUGGUAGCGCAACUGGUUUGGGACCAGUGGGUCGGAGGUUCG
AAUCCUCUCUCGCCGACCAAUUUUGAACCCCGCUUCGGCGGGGUUUUUUG
UUUUCUGUGCAUUU
.((((((.(((((.((((.(((((((...))))))).)...(((((.......)))))..)))..)))))....(((((((((....)))))))))........)))))).... (-39.20)

Length sequence:

114

Length match:

81