gi_545778205_gb_U000_541

cmsearch-Rfam

Family :

sX9

Id:

RF02228

Type:

Gene; sRNA;

Dominio:

Eukaryota; Bacteria;

Ontology:

Not found

Description:

not description

Score:

28.4

E-value:

0.002

From sequence:

2689602

To sequence:

2689536

Alignments:

                                                                                   v                  v         NC
                               :<<<<<_____>>>>>,,,<<<<-<____>->>>>,,,,,,,,,,,<<<<<<<_____________~~~~~>>>>>>>:: CS
               RF02228       1 AUGuaCcACuCGuaCAcUccGGuUCCugcGCgCCguCCGcaCCCAcCugACgaCUGCUCGCUAcGU*[1]*uuGUcaGCC 76     
                               A:GUAC A   GUAC:CUCC GUU CU+C CGC GUCC    CCA+      ACUG   GC AC              CC
  gi_545778205_gb_U000 2689602 ACGUACGAUAUGUACGCUCCGGUUUCUCCGCGCUGUCCAUGUCCAG------ACUGUCUGCAACAA*[5]*-------CC 2689536
                               *****************************************99987......45555555555555..4.........** PP

>>

RNAfold

>gi_545778205_gb_U000_541
AGUGGGCGUAAUUGUUGCAGACAGUCUGGACAUGGACAGCGCGGAGAAAC
CGGAGCGUACAUAUCGUACGUGAAGA
..((.((((...((((.((((...))))))))...)).)).))...........((((((.....))))))..... (-11.30)

Length sequence:

76

Length match:

65