gi_545778205_gb_U000_507

cmsearch-Rfam

Family :

STnc100

Id:

RF02076

Type:

Gene;

Dominio:

Eukaryota; Bacteria; Viruses;

Ontology:

Not found

Description:

not description

Score:

20.1

E-value:

0.0044

From sequence:

2167328

To sequence:

2167259

Alignments:

                                                              v v                                     v v NC
                               :::::::::::::((~~~~~~~))-------<<<<-----.<<<<<<<<<______>>>>>>>>>----->>>> CS
               RF02076       1 uCaGauaGAauAUgu*[140]*acAaAauaggcauaaauC.aAaGCCCCuCUcCGgaGGGGCuUuUUUauaugc 206    
                               UCAG+  +  +A ::       ::A   UA+ : :AAA    AAGCCCCUC+   GAGGGGCUU UUU U: : 
  gi_545778205_gb_U000 2167328 UCAGGGCAGCAAAUU*[  4]*GGA-UGUAAUUAGAAACAgGAAGCCCCUCAGUCGAGGGGCUUUUUUGUCGAU 2167259
                               ***987777666654....5..233.223345566666658********************************* PP

>>

RNAfold

>gi_545778205_gb_U000_507
UUAUUUUUUACGCGUAAUACAAUGAAAUAAAAGGAUUUAUUUCUGGUCAC
GUCCACACAUUGACCACAUCGACAAAAAAGCCCCUCGACUGAGGGGCUUC
CUGUUUCUAAUUACAUCCACAUAAUUUGCUGCCCUGACGGCAACGGGUGC
GGCCUUACGACGUGGACUUCUCCCGGCUUCACAAUGUAUCGCUGUACCGA
CUCAU
.......................((((((((....))))))))((((((.((....))..))))))....((((...(((((((((....)))))))))..))))....................((((((......))))))..((((((((..((((..(((((((......)).)))))..))))..))))))))....... (-49.50)

Length sequence:

205

Length match:

68