gi_545778205_gb_U000_524

cmsearch-Rfam

Family :

rsmX

Id:

RF02144

Type:

Gene;

Dominio:

Eukaryota; Bacteria;

Ontology:

Not found

Description:

not description

Score:

25.0

E-value:

0.0012

From sequence:

3377866

To sequence:

3377757

Alignments:

                                    v    v           v    vv            vvv                      vv              NC
                               :::::<<<<<<<<<_____>>>>>>>>><<<<______>>>>(((((((~~~~~~~~~~~~))))))),,,,,,,<<<<<< CS
               RF02144       1 AacAACcggaGcgcAGGAagcgCuccgGGauCAaGGAaGauCGaCCauc*[11]**[17]*gauGGuCuUggaAAaaaCCC 97     
                                A A  CG   :GC   AAGC:   CG                                       U UU GAAAAAACCC
  gi_545778205_gb_U000 3377866 GAAAGUCGGUCUGCGUAAAGCACGUCGUC--------------------*[21]**[28]*-----UUUUCGAAAAAACCC 3377774
                               ***************************94.......................8.....5.......33999********** PP

                                                 NC
                               <<____>>>>>>>>::: CS
               RF02144      98 GCUUcGGCGGGuuuUUU 114    
                               GCUUCGGCGGGUUUUUU
  gi_545778205_gb_U000 3377773 GCUUCGGCGGGUUUUUU 3377757
                               ***************** PP

>>

RNAfold

>gi_545778205_gb_U000_524
AAAAAAACCCGCCGAAGCGGGUUUUUUCGAAAAUUGUUUUCUGCCGGAGC
AGAAGCCAAUUAACGUUUGGAGAACUGCGGACGACGACGUGCUUUACGCA
GACCGACUUUCUU
.(((((((((((....))))))))))).((((((((.(((((((....))))))).))))...((((((........)))))).((...(((.....)))...))..)))).. (-29.90)

Length sequence:

113

Length match:

108