gi_545778205_gb_U000_536

cmsearch-Rfam

Family :

rsmX

Id:

RF02144

Type:

Gene;

Dominio:

Eukaryota; Bacteria;

Ontology:

Not found

Description:

not description

Score:

21.9

E-value:

0.0084

From sequence:

1019054

To sequence:

1018972

Alignments:

                                    v   vv           vv   v                                                      NC
                               :::::<<<<<<<<<_____>>>>>>>>><<<<______>>>>((~~~~~~)),,,,,,,<<<<<<<<____>>>>>>>>:: CS
               RF02144       1 AacAACcggaGcgcAGGAagcgCuccgGGauCAaGGAaGauCGa*[38]*uCuUggaAAaaaCCCGCUUcGGCGGGuuuUU 113    
                                + AA  G:  C::AG   ::G  :C  :::C   G AG::: A      U  U+GAAAAA:CCCGCU C GCGGG:UUUU
  gi_545778205_gb_U000 1019054 GUUAAAGGUAUCAAAGACGUUGUAACUCAGCC---GCAGGCUUA*[10]*UGGUAGAAAAACCCCGCUGCUGCGGGGUUUU 1018973
                               *********99**9999999997777778888...455888866...9..66999************************** PP

                                 NC
                               : CS
               RF02144     114 U 114    
                               U
  gi_545778205_gb_U000 1018972 U 1018972
                               * PP

>>

RNAfold

>gi_545778205_gb_U000_536
UUUACUAAAGGCAAAAAAAACCCCGCAGCAGCGGGGUUUUUCUACCAGAC
GAGAACUUAAGCCUGCGGCUGAGUUACAACGUCUUUGAUACCUUUAACUU
CGAUCUCUACGCGA
.....((((((....(((((((((((....))))))))))).....(((((..((((((.(((...)))))))))....)))))......))))))...(((.........))) (-30.00)

Length sequence:

114

Length match:

81