gi_545778205_gb_U000_530

cmsearch-Rfam

Family :

rsmX

Id:

RF02144

Type:

Gene;

Dominio:

Eukaryota; Bacteria;

Ontology:

Not found

Description:

not description

Score:

23.2

E-value:

0.0037

From sequence:

1987926

To sequence:

1987846

Alignments:

                                    v v          v v  v        v  v                        v                     NC
                               :::::<<<<<~~~~~~>>>>><<<<______>>>>(((((((~~~~~~~~~~~~))))))),,,,,,,<<<<<<<<____> CS
               RF02144       1 AacAACcgga*[13]*uccgGGauCAaGGAaGauCGaCCauc*[11]**[17]*gauGGuCuUggaAAaaaCCCGCUUcGG 104    
                               AA AA : ::      :: : G: CAA GA G :C                         +U + AAAAAACC:GCU CGG
  gi_545778205_gb_U000 1987926 AAUAACUAUU*[ 2]*AAGACGUUCAAAGACGUAC-------*[ 7]**[12]*------AUAACAAAAAACCUGCUCCGG 1987856
                               *****98655...4..3344477777777777777..........5.....6........478889999************ PP

                                          NC
                               >>>>>>>::: CS
               RF02144     105 CGGGuuuUUU 114    
                               C:GGUUUUUU
  gi_545778205_gb_U000 1987855 CAGGUUUUUU 1987846
                               ********** PP

>>

RNAfold

>gi_545778205_gb_U000_530
CCGUCAUCAGGACACAAAAAAACCUGCCGGAGCAGGUUUUUUGUUAUCGG
AACAUAUUGCCUGGCGGUACGUCUUUGAACGUCUUGCAAUAGUUAUUGAA
CAUACUUUUCAGGA
(.(((.....)))((((((((.(((((....)))))))))))))..(((((((.((((((...)))))).)).)))))..)(((((.((.(((..........))).))))))) (-23.00)

Length sequence:

114

Length match:

79