gi_545778205_gb_U000_540

cmsearch-Rfam

Family :

sX4

Id:

RF02223

Type:

Gene; sRNA;

Dominio:

Eukaryota; Bacteria; Viruses;

Ontology:

Not found

Description:

not description

Score:

28.8

E-value:

6.2e-05

From sequence:

1097663

To sequence:

1097495

Alignments:

                                v   v       v           v        vvvv v                     v vvvv       v   v   NC
                               :((((((,,,,<<<<_________>>>><<---<<<<<<<-<<<<<_______>>>>>--->>>>>>>-->>,))))))-- CS
               RF02223       1 AccGgGGAccAucuGgAGaGGagaCagagCagUuaaauGuaCcuGaCuuaAaauCagGaAgaCauuuauaGcaCCuCggGG 81     
                               A CG: :A   U  GG GAGG+G C  AG:+G   AA G  C:: :CU +AAA: ::G A  C     +A:C+: :CG GG
  gi_545778205_gb_U000 1097663 AACGACAA---UUUGGUGAGGUGUCCGAGUGGCUGAAGGAGCACGCCUGGAAAGUGUGUAUACG---GCAACGUAUCGGGG 1097589
                               *9998776...666999*************9999999999*********************996...899999999**9** PP

                                                  vvvv          vvvv                        NC
                               ---------((((((,,,,<<<<_____~~~~~>>>>~~~~~~,,,,,)))))).::::: CS
               RF02223      82 GuUCGaAUCCCCCCCUCUCCGCCAGAUU*[2]*GGCG*[36]*gCAUUGGGGGG.UGAGA 167    
                               GUUCGAAUCCCCCCCUC CCGCCA AUU                CA  GGGGGG UGAGA
  gi_545778205_gb_U000 1097588 GUUCGAAUCCCCCCCUCACCGCCAUAUU*[9]*----*[40]*ACACCGGGGGGaUGAGA 1097495
                               ******************9888877776..5.........8..8888888888868**** PP

>>

RNAfold

>gi_545778205_gb_U000_540
CUCAUCCCCCCGGUGUGUGCAAUAUACGAAAAAAAAGCCCGUACUUUCGU
ACGAGCUCUUCUUUAAAUAUGGCGGUGAGGGGGGGAUUCGAACCCCCGAU
ACGUUGCCGUAUACACACUUUCCAGGCGUGCUCCUUCAGCCACUCGGACA
CCUCACCAAAUUGUCGUU
...........((((.(((................(((.(((((....))))).))).........(((((((((((..(((((........)))))..)))..))))))))........(((.((.(.(((.....)))).)).))))))..))))........... (-39.00)

Length sequence:

168

Length match:

167