gi_545778205_gb_U000_525

cmsearch-Rfam

Family :

rsmX

Id:

RF02144

Type:

Gene;

Dominio:

Eukaryota; Bacteria;

Ontology:

Not found

Description:

not description

Score:

24.8

E-value:

0.0013

From sequence:

209520

To sequence:

209622

Alignments:

                                   v   v             v   v                                                        NC
                              :::::<<<<<<<<<_____>>>>>>>>><<<<____.__>>>>(((((((~~~~~~~~~~~~))))))),,,,,,,<<<<<<< CS
               RF02144      1 AacAACcggaGcgcAGGAagcgCuccgGGauCAaGG.AaGauCGaCCauc*[11]**[17]*gauGGuCuUggaAAaaaCCCG 98    
                              AA  A :G: G:::   AA:::C :C:  AUCA  G  +GAU : C:                  :G : UG+AAAA::: C:
  gi_545778205_gb_U000 209520 AAGCACUGAAGAUUUAAAAAAUCGUCGUUAUCAGCGcCUGAUGAGCU---*[ 7]**[15]*---AGUUCUGAAAAAGGGUCA 209606
                              ********************************9865146***99986......7.....7.....79999************* PP

                                               NC
                              <____>>>>>>>>::: CS
               RF02144     99 CUUcGGCGGGuuuUUU 114   
                              CUUCGG:G :::UUUU
  gi_545778205_gb_U000 209607 CUUCGGUGGCCCUUUU 209622
                              **************** PP

>>

RNAfold

>gi_545778205_gb_U000_525
GUGUUAAGCACUGAAGAUUUAAAAAAUCGUCGUUAUCAGCGCCUGAUGAG
CUACGGUUACGCGUAAUUCGCAAAAGUUCUGAAAAAGGGUCACUUCGGUG
GCCCUUUUUUAUCG
((((...))))(((..........((((((.((((((((...))))))).).))))))..(((.....)))........((((((((((((((....))))))))))))))))) (-34.10)

Length sequence:

114

Length match:

101