gi_545778205_gb_U000_526

cmsearch-Rfam

Family :

rsmX

Id:

RF02144

Type:

Gene;

Dominio:

Eukaryota; Bacteria;

Ontology:

Not found

Description:

not description

Score:

24.5

E-value:

0.0016

From sequence:

3270142

To sequence:

3270069

Alignments:

                                      v v   v     v   v v  vvv        vvv                                        NC
                               :::::<<<<<<<<<_____>>>>>>>>><<<<______>>>>(((((((~~~~~~~~~~~~))))))),,,,,,,<<<<<< CS
               RF02144       1 AacAACcggaGcgcAGGAagcgCuccgGGauCAaGGAaGauCGaCCauc*[11]**[17]*gauGGuCuUggaAAaaaCCC 97     
                                +  ACC : ::G A G   C:: : GG  +                                     U  G AAAAACCC
  gi_545778205_gb_U000 3270142 CUAUACCCAAAAGAAAGCGGCUUAUCGGUCA------------------*[ 6]**[ 7]*-------UACGUAAAAACCC 3270086
                               ****************************555.....................5.....6.........88999******** PP

                                                 NC
                               <<____>>>>>>>>::: CS
               RF02144      98 GCUUcGGCGGGuuuUUU 114    
                               GCUUCGGCGGGUUUUU 
  gi_545778205_gb_U000 3270085 GCUUCGGCGGGUUUUUG 3270069
                               ***************** PP

>>

RNAfold

>gi_545778205_gb_U000_526
CUUUCUGCCCCUCCAAAAGCAAAAACCCGCCGAAGCGGGUUUUUACGUAA
ACCAGGUGAAACUGACCGAUAAGCCGCUUUCUUUUGGGUAUAGCGUCGUG
GACAGUCAUUCAU
((...(((..........)))(((((((((....)))))))))..........))(((((((((.(((....((.((((......))))...))....))).))))..))))) (-23.70)

Length sequence:

113

Length match:

72