gi_545778205_gb_U000_512

cmsearch-Rfam

Family :

STnc550

Id:

RF02081

Type:

Gene; sRNA;

Dominio:

Eukaryota; Bacteria;

Ontology:

Not found

Description:

not description

Score:

393.9

E-value:

1.1e-115

From sequence:

1737843

To sequence:

1737453

Alignments:

                                                    v      v              v                               v      NC
                               ::::::::::::::{{{{{{,<<.___>>[[[[[.[,,,,,(((<<<<<<____>>>>>>,,,,,,,,,,,,,,,<<<<<_ CS
               RF02081       1 UAcAUuUCACUCCAGACCcuAgC.UAAGcuCCUG.auAAacGCCAGGUAAACGUUUGCCUuuACACACCCUaAuCGCaaca 79     
                               U CAUUUCACUCCAGACCCUA C U AG UCCUG A+AA+C C AGGUAAACGUUUGCCUUUACACACC UA  C CAACA
  gi_545778205_gb_U000 1737843 UCCAUUUCACUCCAGACCCUAACuUCAGCUCCUGcAAAAUCGCAAGGUAAACGUUUGCCUUUACACACCUUACGCACAACA 1737763
                               ***********************88*********99999****************************************** PP

                                        vv                                                 v   v   vvv       vvv NC
                               _____>>>>>))),,,<<<___________>>>,,,,]]]]]],}}}}}},,,,,,,,,,(((((,,<<<<<_____>>>> CS
               RF02081      80 UcAGgguuGCGGCACGCCGGaAAAACGACACGGAACGuCAGGaAggGGUCAAUGGCCGgUaCgCuAAuccagUAAGCcugg 160    
                                +AG GUUG  G ACGCCGGAAAAACGACACGGA CGUCAGGAAGGGGUCAAUGGCC GU C:C AAU   :UAAGC:   
  gi_545778205_gb_U000 1737762 AAAGUGUUGCGGUACGCCGGAAAAACGACACGGAGCGUCAGGAAGGGGUCAAUGGCCAGUACGCAAAUAGUGUAAGCGUGG 1737682
                               ********************************************************************************* PP

                                      v                 v   v   v                                         v      NC
                               >,,,,,,<<<--<<_____>>-->>>,,,))))),,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,<<---- CS
               RF02081     161 aAUUUUGuCugAuCUUGAgGaAAaGgGGAaGcGuuAAAAAcaguUAUCAauaUAAAacauGggAGAUUUUUGaacggAAaU 241    
                               AAUUUUG C:GAUCUUGA GAAA:G GGA G:G UAAAAACA UUAUCA UAUAAA+ A GGGAGAUUUUU  A+ : A+U
  gi_545778205_gb_U000 1737681 AAUUUUGGCCGAUCUUGACGAAAAGGGGAAGUGGUAAAAACACUUAUCAUUAUAAAUGACGGGAGAUUUUUUCAUCACAGU 1737601
                               ********************************************************************************* PP

                                                                                              v                  NC
                               ----------------------<-<-<<<______>>>->-.>------------------->>::::::::::::::::: CS
               RF02081     242 GUGuAAAAAUGaGCAAuaUCACuUuUuauGUGGGAauaAaA.aGGAGAAAAaUUGAUGAguAccGAuCUgAAaUUUUCguU 321    
                               GUGUAAAAAUG+G AAUAUCACUUUUU:UGUGG AA:AAAA AGGAGAAAA+UUGAUGAG A: GA CU AAAUUUUC  U
  gi_545778205_gb_U000 1737600 GUGUAAAAAUGCGUAAUAUCACUUUUUGUGUGGUAAUAAAAaAGGAGAAAACUUGAUGAGCACCGACCUUAAAUUUUCACU 1737520
                               **************************************99956************************************** PP

                                                                                                   NC
                               ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CS
               RF02081     322 gaugACaACaaUuAUuGUuCUgGGuuUGAUuGUuGCaGguGGuuUgACaGCaGcgCUGCACUGAUUU 388    
                               G+U+ACAAC+AUUAU+GU CU GGUUUGAU+GU+GC G  GGUUUGAC+GC GCGCUGCACUGAUUU
  gi_545778205_gb_U000 1737519 GGUAACAACGAUUAUCGUCCUCGGUUUGAUCGUAGCCGUGGGUUUGACUGCCGCGCUGCACUGAUUU 1737453
                               ******************************************************************* PP

>>

RNAfold

>gi_545778205_gb_U000_512
AAUCAGUGCAGCGCGGCAGUCAAACCCACGGCUACGAUCAAACCGAGGAC
GAUAAUCGUUGUUACCAGUGAAAAUUUAAGGUCGGUGCUCAUCAAGUUUU
CUCCUUUUUUAUUACCACACAAAAAGUGAUAUUACGCAUUUUUACACACU
GUGAUGAAAAAAUCUCCCGUCAUUUAUAAUGAUAAGUGUUUUUACCACUU
CCCCUUUUCGUCAAGAUCGGCCAAAAUUCCACGCUUACACUAUUUGCGUA
CUGGCCAUUGACCCCUUCCUGACGCUCCGUGUCGUUUUUCCGGCGUACCG
CAACACUUUUGUUGUGCGUAAGGUGUGUAAAGGCAAACGUUUACCUUGCG
AUUUUGCAGGAGCUGAAGUUAGGGUCUGGAGUGAAAUGGA
..(((((((((((.((.((((........)))).(((((.....((.(((((...))))).))..(((((.......((((.....(((.....))).....))))...............(((((((........)))))))...)))))(((((((((........((((((...))))))(((((.......)))))....))))))))).))))).........)).))))............)))))))(((((.((.((.((((((((((((.(((((......)))))...(((((((....)))))))((((((((((((........)))..)))))))))........)))))....)))))))...)).))..))))). (-86.20)

Length sequence:

390

Length match:

389