gi_545778205_gb_U000_523

cmsearch-Rfam

Family :

rsmX

Id:

RF02144

Type:

Gene;

Dominio:

Eukaryota; Bacteria;

Ontology:

Not found

Description:

not description

Score:

31.1

E-value:

2.7e-05

From sequence:

4189525

To sequence:

4189619

Alignments:

                                        v             v          vvv vvv             vvvvv         vvvvvvvv vvv  NC
                               :::::<<<<<<<<<_____>>>>>>>>>~~~~~~(((((((<<<_____>>>,,<<<<<____~~~~~>>>>>))))))), CS
               RF02144       1 AacAACcggaGcgcAGGAagcgCuccgG*[14]*GaCCaucGCcaaGaagGCuaccgaCAGGA*[1]*GucgggauGGuCu 85     
                                    C:G: ::GC G A GC:: :C:G             G::  GA ::C A  +A  G                ++ +
  gi_545778205_gb_U000 4189525 CCUGGCAGAACUGCUGAACGCAGGUCUG*[ 1]*----GCGGUUCUGAUAACGAGUAAUCGUU*[8]*---------AAUA 4189590
                               ***************9988888888888...5......4455555555555544433333333..4...........5569 PP

                                                             NC
                               ,,,,,,<<<<<<<<____>>>>>>>>::: CS
               RF02144      86 UggaAAaaaCCCGCUUcGGCGGGuuuUUU 114    
                                 G AAAAACCCGCUUCGGCGGGUUUUUU
  gi_545778205_gb_U000 4189591 ACGUAAAAACCCGCUUCGGCGGGUUUUUU 4189619
                               99*************************** PP

>>

RNAfold

>gi_545778205_gb_U000_523
AUCUGCCAGCCUGGCAGAACUGCUGAACGCAGGUCUGGGCGGUUCUGAUA
ACGAGUAAUCGUUAAUCCGCAAAUAACGUAAAAACCCGCUUCGGCGGGUU
UUUUUAUGGGGGGA
.(((((((...)))))))((((((.(((....)).).)))))).....((((((....)))))).(((.(..((((...((((((((((....))))))))))))))..).))) (-40.10)

Length sequence:

114

Length match:

93