gi_545778205_gb_U000_506 |
cmsearch-Rfam |
Family : STnc100 |
Id: RF02076 |
Type: Gene; |
Dominio: Eukaryota; Bacteria; Viruses; | Ontology: Not found |
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Description: not description |
Score: 21.2 |
E-value: 0.0021 |
From sequence: 2282761 |
To sequence: 2282853 |
Alignments: NC :::::::::::::(((-------------((((((((,,,,~~~~~~~~~~~~~~~~~~))))))))------)))----- CS RF02076 1 uCaGauaGAauAUguGUUAaAAaAAUuuuGCauGGUGAAUC*[16]**[32]**[51]*CACCauGCAauAuaCacAaAau 162 CA A+ GAA UG:: A A ::C+ AAU gi_545778205_gb_U000 2282761 ACAAACCGAAGCUGCAGCACAUCG-----------------*[ 6]**[ 3]**[ 9]*--------------UGCUGAAU 2282810 ***************977766555....................6.....9.....8................99****** PP
NC --<<<<-----<<<<<<<<<______>>>>>>>>>.----->>>> CS RF02076 163 aggcauaaauCaAaGCCCCuCUcCGgaGGGGCuUu.UUUauaugc 206 A+G :: AA AAA:CCCC:CUCCGG:GGGG:UUU U UAU:: C gi_545778205_gb_U000 2282811 AAGUUGUAA--AAAACCCCGCUCCGGCGGGGUUUUuUGUAUCUGC 2282853 ****99765..99*******************999455899**** PP
>> |
RNAfold |
>gi_545778205_gb_U000_506 CGUUGUUGACGGUAAAGAAAUCAAAGUUAAAGCUCAGGACGUACAGCGUC ACCCGUACAAACCGAAGCUGCAGCACAUCGACUUCGUUCGCGCUUAAUUG CUGAAUAAGUUGUAAAAAACCCCGCUCCGGCGGGGUUUUUUGUAUCUGCA GAUUAUGCCUGAUUACGGUAUUGCUAUUUUUUGCAGGCCAGAUAAGGCGU UCACGC ((((...))))((...........(((....)))...(((((...))))).................((((((.....((((((.(((((.((......)))))))))))))(((((((((((((....)))))))))))))...))))))...((((((.(((..(((..(((........))).))).))).))))))....)) (-60.50) |
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Length sequence: 206 |
Length match: 91 |