gi_545778205_gb_U000_511

cmsearch-Rfam

Family :

STnc180

Id:

RF02079

Type:

Gene; sRNA;

Dominio:

Eukaryota; Bacteria;

Ontology:

Not found

Description:

not description

Score:

20.6

E-value:

0.0054

From sequence:

3853018

To sequence:

3852826

Alignments:

                                                                                                                 NC
                               :::::::::<<~~~~~~>>,,,,,,,,,,,,,,,,,,,,,,,.......,,,,,,,,~~~~~~~~~~~~,,,,,,,,,,,, CS
               RF02079       1 UuaaUuAAUAC*[58]*GUaGcCuAUGAaaAauacAAAuAUg.......AAAUAuUG*[42]**[17]*uCuuuaaCUaAU 173    
                               UU  U+AA AC      GU+ CC AUGA +A+U C A   U        AA UA+U              C+  A   +AU
  gi_545778205_gb_U000 3853018 UUGUUAAACAC*[12]*GUCCCCAAUGACUACUUCCAUGCUCaacgcaaAACUACUA*[38]**[37]*-CAACACACGAU 3852870
                               *********99...9..9999999999999999999998888777776666666666...9.....9...33333344777 PP

                                             v         v                    NC
                               ,,,,,<<<<<<<<<<<_______>>>>>>>>>>>:::::::::: CS
               RF02079     174 CacaAaAcCCCGcuGguGcauuacCagCGGGgUuuUUcaUuUua 217    
                               ++CAAAACCCCGC: G GCA+  C :GCGGGGUUUUUC UUU A
  gi_545778205_gb_U000 3852869 UCCAAAACCCCGCCGGCGCAAACCGGGCGGGGUUUUUCGUUUAA 3852826
                               77****************************************** PP

>>

RNAfold

>gi_545778205_gb_U000_511
CCGGGAGGUGCUUAAACGAAAAACCCCGCCCGGUUUGCGCCGGCGGGGUU
UUGGAAUCGUGUGUUGUUCCAGUCCCUACGGCGCAUUGCCGACGACCACC
ACCACACGCACGACGACCACUGCGGCGGAUGGCGCAGUUGGUAGUAGUUU
UGCGUUGAGCAUGGAAGUAGUCAUUGGGGACCUUGUUGGUUUUGUGUUUA
ACAAUAUUUAUACAAG
((((.(((............((((((((((.(((....)))))))))))))((((((........))))))(((((((((((.....))))..(((.((..(((((((((.(((.(((((((((.(....).))))).))))....))).)))).))....)))..)).)))..)))))))))).))))(((.((((............))))))) (-74.10)

Length sequence:

216

Length match:

191