gi_545778205_gb_U000_522

cmsearch-Rfam

Family :

IS009

Id:

RF02111

Type:

Gene;

Dominio:

Eukaryota; Bacteria; Viruses;

Ontology:

Not found

Description:

not description

Score:

102.7

E-value:

6.4e-27

From sequence:

582898

To sequence:

583101

Alignments:

                                          v                      v                                  v   v    v v  NC
                              :::::::..<--<---<-<_________>->---->-->-------------...------------.(((.--((,,,<-<< CS
               RF02111      1 UGAAaGA..caaagAaGCggAAAaACaGcuCCggauuugagaGguaaAAaaA...aCaaaaAAcAuu.CuG.AUGCAGauAGC 76    
                              UGAAA A  C    A GC:  AA+AC  : C GGA ++GA+ GG+ + AA A    CA  A ACA+U C:  AU CAG+ A :
  gi_545778205_gb_U000 582898 UGAAAUAgcCUGGUAUGCUUCAAUAC--AGCAGGAGCCGAAUGGCUGGAAGAccgUCACCACACAGUuCUAcAUCCAGGAAUU 582978
                              ***9876214445679**99998887..889999999988888877766666699888888888876266578********** PP

                                              v v  v                  v      v  v                                 NC
                              --<<<<_____>>>>>>->,<<<-<<<<_______>>>>>>>,,,,))--))):::::::::::::::::::::::::::::: CS
               RF02111     77 CAGUgAGuAUAUcGCGCuaCUuCAgGAUGcUGUAGAUCcGgAgAaCGCaACaGAgGAAGAaaCaUugUUGCUGGaAgcaUGGA 159   
                              CAGU:AGUAUAU:GC: + CU CA:GAUGCUGUAGAUC:G A+A+CG AA :GAGGAAGAAA AU+GUUGCUGGAAGC UG A
  gi_545778205_gb_U000 582979 CAGUGAGUAUAUUGCGCCACUGCAGGAUGCUGUAGAUCUGGAAAUCGCAACGGAGGAAGAAAGAUCGUUGCUGGAAGCCUGAA 583061
                              **************************************************9******************************** PP

                                                                       NC
                              :::::::::::::::::::::::::::::::::::::::: CS
               RF02111    160 AgAAGUAUCGGGUuUUGuUaaaCCugAAaAAugaAgCaaC 199   
                              A+AAGUAUCGGGU+ UG+UAAACC++ +  A++   C+  
  gi_545778205_gb_U000 583062 AAAAGUAUCGGGUGCUGCUAAACCGUGUGGACACUUCCGU 583101
                              **************************************** PP

>>

RNAfold

>gi_545778205_gb_U000_522
GAAAUAGCCUGGUAUGCUUCAAUACAGCAGGAGCCGAAUGGCUGGAAGAC
CGUCACCACACAGUUCUACAUCCAGGAAUUCAGUGAGUAUAUUGCGCCAC
UGCAGGAUGCUGUAGAUCUGGAAAUCGCAACGGAGGAAGAAAGAUCGUUG
CUGGAAGCCUGAAAAAAGUAUCGGGUGCUGCUAAACCGUGUGGACACUUC
CGU
.......((((((((......))))..))))((((....))))(((((...((..((((((.(((.....((((((...((....(((((.((((......)))).)))))...))))))))....((((((.............))))))(((..((((((........))))))....)))))).)))))))).))))).. (-49.50)

Length sequence:

203

Length match:

202