gi_545778205_gb_U000_517

cmsearch-Rfam

Family :

STnc130

Id:

RF02084

Type:

Gene;

Dominio:

Eukaryota; Bacteria;

Ontology:

Not found

Description:

not description

Score:

122.8

E-value:

1.8e-24

From sequence:

940868

To sequence:

940734

Alignments:

                                                                                          v        v              NC
                              ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::<<______>>------------- CS
               RF02084      1 UAUAucGAAaaaauuaAaaAuuAGcguuAuAugCUGAuUUUCAuuCgAAGGcAGUAUUACuccuAuaGgaGaAGggAUUAUUG 83    
                              UA AUCGAA+AA UU AAAAU+A +G+ AUA G  GAUUUUCA UCGAA G+AGUAUUAC : UA+  : G AG++AUUAUUG
  gi_545778205_gb_U000 940868 UACAUCGAAUAAUUUGAAAAUCAAAGAGAUAGGUAGAUUUUCACUCGAAAGUAGUAUUACGUGUAAGUGAGGAGUAAUUAUUG 940786
                              *********************************************************************************** PP

                                                                                   NC
                              -----------------------<<<<<<<<____>>>>>>>>::::::::: CS
               RF02084     84 ucCGGUAUCAAAagGGCAUAAAAAAAGCGCCCGcAGGCGCUUUUUAaauaAg 135   
                              U+CGGUAUCAAA GG  A AAAAAAAGCGCCCGCAGGCGCUUUUUA+AU+  
  gi_545778205_gb_U000 940785 UUCGGUAUCAAAGGGAGACAAAAAAAGCGCCCGCAGGCGCUUUUUAGAUUCA 940734
                              **************************************************** PP

>>

RNAfold

>gi_545778205_gb_U000_517
GAAUCUAAAAAGCGCCUGCGGGCGCUUUUUUUGUCUCCCUUUGAUACCGA
ACAAUAAUUACUCCUCACUUACACGUAAUACUACUUUCGAGUGAAAAUCU
ACCUAUCUCUUUGAUUUUCAAAUUAUUCGAUGUA
(.....((((((((((....)))))))))).((((.......))))..........(((((.............))))).)(((..(((((((((((((.............)))))))).....))))).))) (-25.10)

Length sequence:

134

Length match:

133