gi_545778205_gb_U000_509

cmsearch-Rfam

Family :

STnc220

Id:

RF02077

Type:

Gene; sRNA;

Dominio:

Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae;

Ontology:

Not found

Description:

not description

Score:

32.6

E-value:

0.00017

From sequence:

1051830

To sequence:

1051910

Alignments:

                                             v       v                                                           NC
                               ::::::::((,,,<<<_____>>>,,,,,,,,,,,,,,,,,,,,,,,,,,,<<<<<<_____>>>>>>,,,,,,,,...,) CS
               RF02077       1 AUAcAUucGCUCAGGaCAGgUuCCGCuAGAUUUUAgAAAAUAAUUCAUAUUaGCuCCgUACAGGaGCuUUUUUuaA...UG 78     
                                 A AU CGC C G :CA G : CGCU GAUUU A AAAAUAAU       :GCUCC U   GGAGC:UUUUUUA    UG
  gi_545778205_gb_U000 1051830 GCAAAUACGCACUGACCAUGCGCCGCUGGAUUUCACAAAAUAAUAU---CAGGCUCCCUCGUGGAGCCUUUUUUAUaucUG 1051907
                               ****************************************998754...3599*****9999****99998887642226* PP

                                   NC
                               ):: CS
               RF02077      79 CCC 81     
                               CC 
  gi_545778205_gb_U000 1051908 CCU 1051910
                               *** PP

>>

RNAfold

>gi_545778205_gb_U000_509
CAAAUACGCACUGACCAUGCGCCGCUGGAUUUCACAAAAUAAUAUCAGGC
UCCCUCGUGGAGCCUUUUUUAUAUCUGCCU
......((((.......))))..((.((((........((((....(((((((.....)))))))...)))))))))).. ( -8.90)

Length sequence:

80

Length match:

79