gi_545778205_gb_U000_1

cmsearch-Rfam

Family :

5_8S_rRNA

Id:

RF00002

Type:

Gene; rRNA;

Taxonomy:

Eukaryota; Bacteria; Viruses; Archaea;

Ontology:

GO:0003735 structural constituent of ribosomeRF00002

Description:

5.8S ribosomal RNA (5.8S rRNA) is a component of the large subunit of the eukaryotic ribosome.
It is transcribed by RNA polymerase I as part of the 45S precursor that also
contains 18S and 28S rRNA. Functionally, it is thought that 5.8S rRNA may be involved
in ribosome translocation [2]. It is also known to form covalent linkage to the p53
tumour suppressor protein [3]. 5.8S rRNA is also found in archaea.

Score:

38.9

E-value:

4.3e-08

From sequence:

225771

To sequence:

225924

Alignments:

                                                                                                                  NC
                              :::::::::::::::::::::::::.::::::::::::::((((<<<<______>>>>,,,,,,,<<<----~~~~~~----> CS
               RF00002      1 AACuuUuAgCGAUGGAUguCUuGGC.UCccGuaUCGAUGAAgaaCGCaGCaAAauGCGAUAcGUaguGUGAA*[14]*gAAUC 90    
                              AA   U  +CG+UGGAUG C UGGC   C G   CGAUGAAG:ACG:   AA   :CGAUA+G++ :G  AA       AA C
  gi_545778205_gb_U000 225771 AAGCGUACACGGUGGAUGCCCUGGCaGUCAGAGGCGAUGAAGGACGUGCUAAUCUGCGAUAAGCGUCGGUAA*[17]*UAACC 225864
                              *************************967788999*************86666669*************9888...8..57889 PP

                                                                                                NC
                              >>,,,,,,)))),,,<<<.___>>><<<<<<<<<____>>>>>>>>>:::::::::::::::::: CS
               RF00002     91 acCGAAucuucGAACGCa.aaUuGCGcccccgggUuuucccgggggCAUgccUGuuugAGUGUCa 154   
                              : CGA U+U:CGAA G : AA : C:::::::  UU+   :::::::AU   U  +UGA U   +
  gi_545778205_gb_U000 225865 GGCGA-UUUCCGAAUGGGgAAACCCAGUGUGU--UUCG--ACACACUAUCAUUAACUGAAUCCAU 225924
                              99998.79*******88735667889999888..9999..8889999****************** PP

>>

RNAfold
>gi_545778205_gb_U000_1
AGCGUACACGGUGGAUGCCCUGGCAGUCAGAGGCGAUGAAGGACGUGCUA
AUCUGCGAUAAGCGUCGGUAAGGUGAUAUGAACCGUUAUAACCGGCGAUU
UCCGAAUGGGGAAACCCAGUGUGUUUCGACACACUAUCAUUAACUGAAUC
CAU
..........((((((((((((.....))).)))...........(((......))).....(((((((..(((.......)))......))))))).........((((....))))((((((....))))))..(((.....))))))))) (-41.10)

Length sequence

: 153

Length match:

152