Alignments: NC
:::::{{{{,,,,,,{{{{{{{{{{-----{{{,,{{{{.{{{{{{,,,,,,,((((<<<________>>>,,,,,<<<<<<- CS
RF02540 1 uauaucgcgcuauuAcgCcgcccgGuGGAUGGCUcGGCU.cGgGcGcCGAuGAaGGgcGuGgCAAGCUgCgAUAAGCccgGGG 82
+ +U:::: + U A ::::C:CGGUGGAUG:C +GGC: :::G:G CGAUGA:GG:CGUG AA CUGCGAUAAGC:::GG
gi_545778205_gb_U000 225758 AGGUUAAGCGACUAAGCGUACACGGUGGAUGCCCUGGCAgUCAGAGGCGAUGAAGGACGUGCUAAUCUGCGAUAAGCGUCGGU 225840
**************************************636789*************************************** PP
NC
--<<<_______>>>.------>>>>>>,,,)))),,,<<<____>>>,,,,,,,,,,,,,,....,<<<<<____....... CS
RF02540 83 gAGgcGCAuGcAgcC.uuuGAuCCcggGAUucCCuAAUgGGAauUCCcguuacuuuuuaaac....gcucccuauu....... 153
AGG:G + A:CC UU+ A+CC:::GAUU:CC:AAUGGG A CCC+ U + UUU A +:::::+A U
gi_545778205_gb_U000 225841 AAGGUGAUAUGAACCgUUAUAACCGGCGAUUUCCGAAUGGGGAAACCCAGUGUGUUUCGACAcacuAUCAUUAACUgaaucca 225923
***************445689****************************8888877777766899999999999889999*** PP
NC
......>>>>>,,,,,,<<<<<<-----<<____>>------>>>>>->,,,,,,,,,<<____>>,,,<<<<<-----<<__ CS
RF02540 154 ......gggagcGGGAACcCcccGAAuuGAAaCAUCUuAGUAgggGgAGGAaaAGAAAcCAAuuGgGAUgcCgcuAGUAgcGG 230
::::: G GAACC::::GAA UGAAACAUCU AGUA::::GAGGAAAAGAAA:CAA +G:GAU:CC:C AGUAGCGG
gi_545778205_gb_U000 225924 uagguuAAUGAGGCGAACCGGGGGAACUGAAACAUCUAAGUACCCCGAGGAAAAGAAAUCAACCGAGAUUCCCCCAGUAGCGG 226006
*****9***************************************************************************** PP
NC
___>>---->>>>>,,[[[[,,,,~~~~~~,,,,,,,,,,((((------((((------------(((,,,<-<<<<_____ CS
RF02540 231 CGAgcGAAAgcGgcauAGccCAAA*[34]*uGUugugggccggcuuuaaugcgccuaguuaaugaAgccGAAgUggccUGGAA 341
CGAGCGAA G:GG: +AGCCCA A UG + ::G + U + ++AG::GAAG :G CUGGAA
gi_545778205_gb_U000 226007 CGAGCGAACGGGGAGGAGCCCAGA*[ 3]*UGAAU---------------CAGUG--UGUGUGUUAGUGGAAG-CGUCUGGAA 226068
************************...5..66554...............88888..77888899********.********* PP
NC
_>>>>>,,<___>,<<<_______>>>,,,)))------------))))----)))),,,,,,,,,,,<<<<<<<___...__ CS
RF02540 342 uggcccgccauAgAGGGUGAuAGcCCCGUAggcguAaucuaaaaggcgcuugagccguuuccaGAGUAcCgcgggUUG...Ga 421
+G C:CGC:AUA:AGGGUGA AGCCCCGUA::C +AA + A A C::U + U +GAGUA:: C GG G
gi_545778205_gb_U000 226069 AGGCGCGCGAUACAGGGUGACAGCCCCGUACACAAAAAUGCACAUGCUGUGAG----CUCGAUGAGUAGGGCGGGACAcguGG 226147
****************************************9999999998777....8999**************76422367 PP
NC
___>>>>>>>,,,,,,<<<<<_______>>>>>,,]]]],,,,,}}-}}}}.}}-}},,,,,,,,,,,,,,,<<____>>,,, CS
RF02540 422 auUcccgcGgGAAuaugGggGgcAucaaCccCcAAggCUAAAUACguCcCg.AGACCGAUAGcGaAcuAGUAccGUGAggGAA 503
++UCC G ::GAAUAUGG:GGG A CA CC:CCAAGGCUAAAUAC: C::: :GACCGAUAG+GAAC AGUACCGUGAGGGAA
gi_545778205_gb_U000 226148 UAUCCUGUCUGAAUAUGGGGGG-ACCAUCCUCCAAGGCUAAAUACUCCUGAcUGACCGAUAGUGAACCAGUACCGUGAGGGAA 226229
788****************997.89999*******************987636****************************** PP
vv v NC
,}}--------------.-----------.--------}-----}}}}}}}}}},,,,,,,<<<<<<<<<<-~~~~~~>>>>> CS
RF02540 504 AGCUGAAAAGuAcCccu.gaaGGGggGUG.AAAAGaGCCUGAAACcgggcgGcgAuagaauggcgcggCccg*[61]*ggGuc 639
AG: GAAAAG+ACCCC+ AGGGG GUG AAAAGA CCUGAAACCG:G:::: A+A +G G GC::G ::GU
gi_545778205_gb_U000 226230 AGGCGAAAAGAACCCCGgCGAGGGGAGUGaAAAAGAACCUGAAACCGUGUACGUACAAGCAGUGGGAGCAUG*[ 7]*GUGUG 226313
*****************8889999999998899************************************986...9..89*** PP
v v v v v v v NC
>>>>>,,<<<<________>>>>{{{{{{,,,,(((((((((((((,,<<<<--<<<<_____>>>>-->>>>,,,<<____> CS
RF02540 640 gcgccgUcCGUuUuGAAaaACGggCCgGGGAGUucgcggccguGgCGAGccUAAgggguuuAaccccGaAggCGuAGgGAAAc 722
C CGU C UUUUG A AA G G:C:G GA UU:::::C:G :GC AG::UAA:: : A: ::G A::CG+AGGGAAAC
gi_545778205_gb_U000 226314 ACUGCGUACCUUUUGUAUAAUGGGUCAGCGACUUAUAUUCUGUAGCAAGGUUAACCGA----AUAGGGGAGCCGAAGGGAAAC 226392
*******************************************************954....4669***************** PP
v NC
>,,,,,~~~~~~~~~~~~,,,,))))))))))))),,[[-[---[[[[[[,,,((((((((((((,<<<<---<<<<<<<___ CS
RF02540 723 CGAuaa*[26]**[16]*uggAGuCacggccgcgaGACCaGAAaCCgggCGAUCUaggCccggGCAGGgcGAAgccgggcgaA 835
CGA U++AGU: C:G:::::AGACC+GAAACC:GG:GAUC AG:C::: GCAGG::GAAG::::G AA
gi_545778205_gb_U000 226393 CGAG--*[ 7]**[ 6]*UUAAGUUGCAGGGUAUAGACCCGAAACCCGGUGAUCUAGCCAUGGGCAGGUUGAAGGUUGGGUAA 226474
**96.....9.....*..9**************************************************************** PP
v v v NC
_>>>>>>>---->>>>,,,,<<<<-<<-<<________>>>>>>>>,,)-))))))))))),<<<_____>>>,,,,,,]]]] CS
RF02540 836 AgcccgguGGAGgcCCGauAggggUgcUGaugUGCAAauCgcccccgUGACccggGccuAGGGGcgAAAGgCCAAUCuAGccc 918
C::::UGGAG::CCGA A::G :: :: UG AAA:::: C::+UGAC :::G:CU GGGG:GAAAG:CCAAUC A:CC:
gi_545778205_gb_U000 226475 CACUAACUGGAGGACCGA-ACCGACUA-AUGUUGAAAAAUUAGCGGAUGACUUGUGGCUGGGGGUGAAAGGCCAAUCAAACCG 226555
******************.*****999.9****************************************************** PP
vv v v vvv NC
]]------]-]],,[[[[[[,,,,<<<<<____>>>>>,<<<<<<<---<<<-<<<<<<<<----<<<----<<<<<<<<<<- CS
RF02540 919 GGuaAuAGCUGGUUCCcgcCGAAacggccCgcAggccgacCccggcgGAGgcuGgcggcgggGUAGaGCACugaccGgggggu 1001
GG +AUAGCUGGUUC:C:CCGAAA::::: + :::::+CC:CG:: : +::::::G GGUAGAGCACUG ::GG
gi_545778205_gb_U000 226556 GGAGAUAGCUGGUUCUCCCCGAAAGCUAUUUAGGUAGCGCCUCGUGAA-CUCAUCUCCGGGGGUAGAGCACUGUUUCGGC--- 226634
*********************************************975.7789************************993... PP
vvv v v vv NC
-~~~~~~>>>>>>>>>>--->>->---->>>>>>>>>>>------>>>>>>->,,,<<<<<<<<<__._____>>>>>>>>>, CS
RF02540 1002 u*[18]*cccccCggucaAACuCCGAAcccgccgcCgcCGuAGAagccggGAgucgGgcgcccgggG.UAAGcccgggcgcCG 1095
+ ++ CC:: CAAACU CGAA+ C:::::: : U A+::CG:GAG C+ :CG C:G: G UAA :C:G CG:
gi_545778205_gb_U000 226635 A*[21]*AACCCGAUGCAAACUGCGAAUACCGGAGAAUGUU--AUCACGGGAGACACACGGCGGGUGcUAACGUCCGUCGUGA 226730
2...3..34599************************87766..56******************9977478888********** PP
v vv NC
,,,<<<______>>>,,,((((.(((---(((------(-((((((----------------(((-((((((((((------- CS
RF02540 1096 aGAGGGgaACAACCCAGAccgg.GGUUAAGGuCCCuAAgUgccGGcUAAGUGucAaucuaAAGgguGuccccggcCuaAGACA 1177
AGAGGG+AACAACCCAGACCG: :G:UAAGGUCCC AAGU:::GG:UAAGUG AAA:G UGU :: G C AGACA
gi_545778205_gb_U000 226731 AGAGGGAAACAACCCAGACCGCcAGCUAAGGUCCCAAAGUCAUGGUUAAGUGGG-----AAACGAUGUGGGAAGGCCCAGACA 226808
*********************55*****************************95.....568********************* PP
vv v NC
(((((,<<<--<<<_________>>>-->>><___><---<<______>>->,)))))---)))))))))))))--------. CS
RF02540 1178 gCggGgaGGUagGCUuAGAAGCAGCcAUCCucUAAgGAgUGCGUAAcAGCUCACccGcCGAGgccgggggCccCgAAAAUGg. 1259
:C::GGA GU GGCUUAGAAGCAGCCAUC U:UAA:GA GCGUAA AGCUCAC::G:CGAG C :: GC C:GAA AUG
gi_545778205_gb_U000 226809 GCCAGGAUGUUGGCUUAGAAGCAGCCAUCAUUUAAAGAAAGCGUAAUAGCUCACUGGUCGAGUCGGCCUGCGCGGAAGAUGUa 226891
*********************************************************************************97 PP
v NC
-----------))))))))))---)))))))<<<<<<<________>>>>>-->>,,,,]]]]]]<-<<<<<.<<<<<----- CS
RF02540 1260 aCGGGGCUuAAgCCggccaCCGAuACCccggggcgcgcuuauuaaagcgcgAuccgGUAGgcgGGCGucccg.cccGGguaGA 1341
ACGGGGCU AA:CC:::CACCGA :C::CGG:: : :C +U+++ G: : ::GGUAGG:G:GCGU:C:G : : GA
gi_545778205_gb_U000 226892 ACGGGGCU-AAACCAUGCACCGAAGCUGCGGCAGCGACGCUUAUGCGUUGU--UGGGUAGGGGAGCGUUCUGuAAGCCUGUGA 226971
88888888.89**********************655555555555555555..*******************445688899** PP
v NC
-<<<<<<<<____>>>>>>>>--->>>>>>>>>>-->,,,,,}}}}}},,,,,,,,,,,,,,,<<<<<<_______>>>>>>{ CS
RF02540 1342 AgccgGgccGuGAggcCcgguGGACCgggcgggaauGaaaAUCCcGGcgguAGUAgCAGCaaAGuggGGUGAGAAUCCccaCc 1424
AG: ::C:GUGA:G:: :UGGA: :C:G:A UG++AAU C:G:C+ AGUA+C G AA:::GGGUGA AA CCC:::C
gi_545778205_gb_U000 226972 AGGUGUACUGUGAGGUAUGCUGGAGGUAUCAGAAGUGCGAAUGCUGACAUAAGUAAC-GAUAAAGCGGGUGAAAAGCCCGCUC 227053
*******************************************************99.66799******************** PP
v v v v NC
{{{,,,,{{{{,,{{,,,<<<<<<---<<_____>>->>>>>>,,,,,,[[[,<<.---<<<<<<<<<_____>>>->>>>>> CS
RF02540 1425 GCCGaAaGgGCaAGGGUUccccGGCAAuGuUcGUCaGCCggggGUUAGuCGGUCC.UAAggcgggccguAAcucggacccgcc 1506
GCCG AAG::CAAGGGUUCC:: :CAA:GUU +UC:G: ::GGGU AGUCG: CC UAAG:C :G:C: AA :G: : G:C
gi_545778205_gb_U000 227054 GCCGGAAGACCAAGGGUUCCUGUCCAACGUUAAUCGGGGCAGGGUGAGUCGACCCcUAAGGCGAGGCCGAAA-GGCG-UAGUC 227134
****************************************************76539999999988888777.9995.67899 PP
vv v NC
---->>,,,<<<<<________>>>>>,,((((((((-------------------------(((---(((((((((--(((( CS
RF02540 1507 GAAaGGGAAgcgGGUUAAUAUUCCcgcgCcgcgggggUaggugcgguAacgcaagccuaauucccGACgccucggGgUAggcc 1589
GA +GGGAA:C:GGUUAAUAUUCC:G:+C::: :G:: +G+G AA ::GAC: : GG:UA:G::
gi_545778205_gb_U000 227135 GA-UGGGAAACAGGUUAAUAUUCCUGUACUUGGUGUUACUGCG---------------AAGGGGGGACGGAGAAGGCUAUGUU 227201
85.799*******************************544422...............3345888****************** PP
v v v v v v v v NC
(<<<<<<..________>>>>>>,.,,<<<<-----<<<<<<<<<-<<<_____>>>->>>>>>>.>>----->>>>,,,,,, CS
RF02540 1590 gggcggg..gcuguCgucccgccu.AAgcgcuuAAgcccggcgagagcCGUAAUGgcGcgagccg.ggugAAggcgcgAuugG 1668
G::CGGG +C GU GUCCCG::U AA:CG: UA GC: G ::: :: AAU:: G ::: C :G+ AG:CG:GAU++
gi_545778205_gb_U000 227202 GGCCGGGcgACGGUUGUCCCGGUUuAAGCGUGUAGGCUGGUUUUCCAGGCAAAUCCGGAAAAUCAaGGCUGAGGCGUGAUGAC 227284
******99556666666999998627788888888887666666666666678888666666666435677778888888887 PP
v vv NC
,,,,,<____..>,,,,,,,)))))---)))))))))---------.))).------------)))))))),]]],,}},,,, CS
RF02540 1669 cuuuccgUaa..ggagagUUcggccgAucCccggggcCCaUGAAAA.ggg.auugggaaugAucccccgcguCCGUACCgAGA 1747
C: UA :G +++ C::C:+AU:CC : :CCA GAAAA :: ++G + G U::C: :::+:CGUACC A
gi_545778205_gb_U000 227285 GAGGCACUACggUGCUGAAGCAACAAAUGCCCUGCUUCCAGGAAAAgCCUcUAAGCAUCAGGUAACAUCAAAUCGUACCCCAA 227367
77777666655588899999*********9988777777778887744444666667778889******************** PP
v v NC
,<<______>>,}}}},<<<<_______>>>>,}}}},,,{{{{-----{{{{{{{{-{{{,,,,,,,,,,,,,,<<<<<--- CS
RF02540 1748 aCCGACACAGGUGCcCcugGcUGAGaAGgCcaAGGCgUaUcGGguauAAcccgggcgAGGgAAuUCGGCAAAuUagccCCGUA 1830
ACCGACACAGGUG::C GG: GAGAA :CCAAGGCG + :G:G A AAC:CGGG:GA:GGAA+U GGCAAA U+:::CCGUA
gi_545778205_gb_U000 227368 ACCGACACAGGUGGUCA-GGUAGAGAAUACCAAGGCGCU-UGAG-AGAACUCGGGUGAAGGAACUAGGCAAAAUGGUGCCGUA 227447
****************7.*******************86.9***.99************************************ PP
v v v v NC
<<____>>---->>>>><<<<<<<<<._______...................>>>>>>>>><___>,,,,,,,[[[[[[[[[ CS
RF02540 1831 ccUUcGggAgAAGGggugCCuGcggc.uuggaaa...................gccgCaGGuCGCAGUGACuAGGGggccCcg 1893
:CUUCGG:AGAAGG:::GC:::: : G +AA : ::::GUCG AG AC AG::GGC: C:
gi_545778205_gb_U000 227448 ACUUCGGGAGAAGGCACGCUGAUAUGuAGGUGAAgcgacuugcucguggagcuGAAAUCAGUCGAAGAUACCAGCUGGCUGCA 227530
*********************9988765555555788888888888888888878899************************* PP
v v NC
,,<<<_________>>>,,<<<<<<<<<--<<<<____>>>>-->-->>>>>>>>,,((((,<<<--<<<<<<<--<<<---- CS
RF02540 1894 ACUGUUUAauAAAAACAuAggcccCcGCuAgcCCGaAAGGgcguGUACgGgggccGAcuCCUGcCCAgugccGGUAccuGAAa 1976
ACUGUUUA UAAAAACA A:::C :::C+A C:CGAAAG:G GUA::: G:::GAC:CCUGCCC GUGCCGG A::U AA
gi_545778205_gb_U000 227531 ACUGUUUAUUAAAAACACAGCACUGUGCAAACACGAAAGUGGACGUAUACGGUGUGACGCCUGCCCGGUGCCGGAAGGUUAAU 227613
*********************************************************************************99 PP
NC
~~~~~~---->>>>>>>>-->>>>><<<<<<_______>>>>>><___>,,,,,,,,,,,,,,,<<<<<<_____>>>>>>,, CS
RF02540 1977 *[16]*cgAAgggCCgguaAacGgCGgGgGUAACUaUGACcCuCuUAAgGUAGCgaAAUaCCUuGcCGgcUaAgUgcCGgCuu 2069
CGAAG::CCGGUAAACGGCGG::GUAACUAU AC::UC:UAA:GUAGCGAAAU+CCUUG:CGG:UAAGU:CCG:C U
gi_545778205_gb_U000 227614 *[31]*CGAAGCCCCGGUAAACGGCGGCCGUAACUAUAACGGUCCUAAGGUAGCGAAAUUCCUUGUCGGGUAAGUUCCGACCU 227721
...9..689************************************************************************** PP
NC
,,,,,,,,)))),,,]]-]]]]]]],,,,}}}-}}}}}}}}-}}}},,,,,,,,,,,,,<<<<<________>>>>>,,{{{{ CS
RF02540 2070 GcAUGAAuGGaguAAcgAGggccCCACUGuCCccgcccgggacCCggUGAAcuuacugugccgGuGcAcAguCcggcgacccC 2152
GCA GAAUGG:GUAA:GA :GCC:: CUGUC:CC:CCCG:GAC:C:GUGAA+UU ++ U: C:GUG A+A C:G : ACCC
gi_545778205_gb_U000 227722 GCACGAAUGGCGUAAUGAUGGCCAGGCUGUCUCCACCCGAGACUCAGUGAAAUUGAACUCGCUGUGAAGAUGCAGUGUACCCG 227804
*********************************************************************************** PP
v v NC
{{{{-{{{-{{,,,,,,{{{{-{{{{{{{,((((---(((((((,,<<<<<<<<<<<<<<<<<<---------<<<<<--<<< CS
RF02540 2153 cggcggGgAGcGAAGACCCcgUgGAgCUUUACuGCAGcCugccguUGgggcgcggccgcgggcgcguAGuGUAGguGGGAGcc 2235
CGGC+:G: G: AAGACCCCGUG:A:CUUUACU: AGC: G:C: UG:::::::: C :::::G+GUAG UAGGUGGGAG:C
gi_545778205_gb_U000 227805 CGGCAAGACGGAAAGACCCCGUGAACCUUUACUAUAGCUUGACACUGAACAUUGAGCCUUGAUGUGUAGGAUAGGUGGGAGGC 227887
*********************************************************************************** PP
v v NC
---------<<<<<____>>>>>------>>>------------>>>>>>>>>>>>>>>>>>>>>>>,,,<<<<._____... CS
RF02540 2236 guugaagcccccccuccggggggggugGAggCgacaaUGaaACACCacCcgcccgcggccgcgcccCUaACccc.uaaaa... 2314
UUGAAG+ ::C CC+G:: UGGAG:CGAC UGAAA ACCACCC::::: G ::::::::CUAAC::
gi_545778205_gb_U000 227888 UUUGAAGUGUGGACGCCAGUCUGCAUGGAGCCGACCUUGAAAUACCACCCUUUAAUGUUUGAUGUUCUAACGUUgACCCGuaa 227970
************************************************************************99755444567 PP
v v NC
.......>>>>,,,,,)))))))----)))),,<<<<_____>>>-><<<<<<___________>>>>>>,,[[,,,,((((( CS
RF02540 2315 .......gggGGACAucggcaGgUGGGCaGUUuGGcuGGGGCggCACgCccccGAAAAgaUAuCggggGcGCCCaAAGgucgg 2390
::GGACA :G:C :GUGGG:AGUUUG:CUGGGGCGG: C:CC:CC AAA +UA+CGG:GG:GC:C AAGGU:GG
gi_545778205_gb_U000 227971 uccggguUGCGGACAGUGUCUGGUGGGUAGUUUGACUGGGGCGGU-CUCCUCCUAAAGAGUAACGGAGGAGCACGAAGGUUGG 228052
888888899************************************.************************************* PP
vv vv NC
(<<-<<<<<<_______>>>>>>--->><<______>>,,,,)))))),,,,<<<<<<<<<_________>>>>>>>>>,<-< CS
RF02540 2391 CUCAggcGGguCAGAAacCCgccGuAGAGcGcAAGGgCAAAAGccggccUGACugggccccuaAaagcaaggggcccaGaggc 2473
CU A::C G:UC GA A:C G::G AG:GCAA G:CA AAGCC:GC+UGACUG: :C:U A+ G :G: :CAG :GC
gi_545778205_gb_U000 228053 CUAAUCCUGGUCGGACAUCAGGAGGUUAGUGCAAUGGCAUAAGCCAGCUUGACUGCGAGCGUGACGG---CGCGAGCAGGUGC 228132
*************************************************************988765...************* PP
NC
____>->,]],,,,,,,,,,<<<<<-<<<<<_______>>>>>>>>>>,,,,,...,,,,}}}}}--}}}}}},,,,,,,,<< CS
RF02540 2474 GAAAgccgGGcCUAGCGAACccccguGcCcccuuggUGggGgCcggggAuGAC...AGAAAAGcUACCccgGGGAUAACaGag 2553
GAAAGC:GG:C UAG GA CC: :G G C: G :G CC: :G U A A AAAAG:UAC:CCGGGGAUAACAG::
gi_545778205_gb_U000 228133 GAAAGCAGGUCAUAGUGAUCCGGUG-GUUCUGAAUGGAAGGGCCAUCGCUCAAcggAUAAAAGGUACUCCGGGGAUAACAGGC 228214
*************************.999999999999**********987753337789*********************** PP
NC
<-<<<<<<<<---<<_______>>--->>>>>>>-->>>>,,,,,,,,,,(((((((((((,,<<--<<<<<______>>>>> CS
RF02540 2554 ucgucgCgGGCgAGAGcuCauAUCGACCCcGcgguUugcuACcUCGAUGUCgGcucuccCcAUCCUGGcgguGCAGcAgccgC 2636
U :U::CG: C+AGAG+UCAUAUCGAC :CG::GUU:G::ACCUCGAUGUCGGCUC::C CAUCCUGG: :UG AG AG: :C
gi_545778205_gb_U000 228215 UGAUACCGCCCAAGAGUUCAUAUCGACGGCGGUGUUUGGCACCUCGAUGUCGGCUCAUCACAUCCUGGGGCUGAAGUAGGUCC 228297
*********************************************************************************** PP
NC
---->>,<<<<<_____>>>>>,,,,,)))))--)--))))-),,,,,<<<<<<<____>>>->>>>,,,,}}--}}}}}}}} CS
RF02540 2637 CAAGGGUcgGGcUGuUCgCCcgUUAAAgGggaaCgUGagCuGGGUUuAGacCGuCGuGAGaCAGguCGGuugCUacCcgccgG 2719
CAAGGGU::GGCUGUUCGCC::UUAAAG G::ACG GAGCUGGGUUUAGA:CGUCGUGAGACAG:UCGGU :CUA:C:GCCG
gi_545778205_gb_U000 228298 CAAGGGUAUGGCUGUUCGCCAUUUAAAGUGGUACGCGAGCUGGGUUUAGAACGUCGUGAGACAGUUCGGUCCCUAUCUGCCGU 228380
*********************************************************************************** PP
v v NC
}}},,,,((((((((--((((,,<<<<<<<<_______________>>>>>>>><<<<<---<<<----<<<<<<<<<<.___ CS
RF02540 2720 gggUGuugGccGcCUGAgGGgAAGgcgccccUAGUACGAGAGGAACggggcgcCgggGCCuCugGUgUAcCGGuuGuCc.Gau 2801
GGG G UGG::::CUGAGGGG :: C:CCUAGUACGAGAGGA CGG:G ::+:G:::C+CU:GUGU C:GGUUGUC: G +
gi_545778205_gb_U000 228381 GGGCGCUGGAGAACUGAGGGGGG-CUGCUCCUAGUACGAGAGGACCGGAGUGGACGCAUCACUGGUGUUCGGGUUGUCAuGCC 228462
*********************86.******************************************************85655 PP
NC
_.>>>>>-->>>>>---->>>->>>>>,,.<<<----<<<<<___________>>>>>---->>>,))))------))))))) CS
RF02540 2802 a.gGgCaaugCCGgGcAGCcacGCcccaa.gggaUAAggGCUGAAaGCAUCUAAGCccGAAacccucCCcGAAAAgAGgCggC 2882
A :GGCA UGCC:GG+AGC:A :::C: A :GAUAAG:GCUGAAAGCAUCUAAGC:CGAAAC: CCCCGA A GAG::::C
gi_545778205_gb_U000 228463 AaUGGCACUGCCCGGUAGCUAAAUGCGGAaGAGAUAAGUGCUGAAAGCAUCUAAGCACGAAACUUGCCCCGAGAUGAGUUCUC 228545
558***********************98889**************************************************** PP
vv vv NC
),................,,,,,((((<<<<<_______>>>>>,,,,<<<<<<<<<<<--<--<<<<<--<______>-->> CS
RF02540 2883 cu................gauuAgGgcccccgUAgAAGAcggggUuGAUgGggcgGgGGUGuAAgccccgAGguuaauCGAgg 2949
C + +AGG C:: G AGA GAC ::GUUGAU:G::CGG GUGUAA:C:C: G CGA:G
gi_545778205_gb_U000 228546 CCugacuccuugagagucCUGAAGGAACGUUGAAGACGACGACGUUGAUAGGCCGGGUGUGUAAGCGCA--G------CGAUG 228620
******************999***********************************************9..9......9**** PP
vv vv NC
>>>>--->>>->>>>>->>>,,,)))),,,,,}}}}::::: CS
RF02540 2950 ggcuuAGCCcgCcgccaCcAAuagcCcgAaugcgcgauauu 2990
:G:U AGC +CCG::AC:AAU CCG +G::::A+ U
gi_545778205_gb_U000 228621 CGUUGAGCUAACCGGUACUAAUGAACCGUGAGGCUUAACCU 228661
***************************************** PP
>> |
