Alignments: NC
:::::{{{{,,,,,,{{{{{{{{{{-----{{{,,{{{{.{{{{{{,,,,,,,((((<<<________>>>,,,,,<<<<< CS
RF02540 1 uauaucgcgcuauuAcgCcgcccgGuGGAUGGCUcGGCU.cGgGcGcCGAuGAaGGgcGuGgCAAGCUgCgAUAAGCccgG 80
+ +U:::: + U A ::::C:CGGUGGAUG:C +GGC: :::G:G CGAUGA:GG:CGUG AA CUGCGAUAAGC:::G
gi_545778205_gb_U000 4168640 AGGUUAAGCGACUAAGCGUACACGGUGGAUGCCCUGGCAgUCAGAGGCGAUGAAGGACGUGCUAAUCUGCGAUAAGCGUCG 4168720
**************************************636789************************************* PP
NC
<---<<<_______>>>.------>>>>>>,,,)))),,,<<<____>>>,,,,,,,,,,,,,,....,<<<<<____... CS
RF02540 81 GGgAGgcGCAuGcAgcC.uuuGAuCCcggGAUucCCuAAUgGGAauUCCcguuacuuuuuaaac....gcucccuauu... 153
G AGG:G + A:CC UU+ A+CC:::GAUU:CC:AAUGGG A CCC+ U + UUU A +:::::+A U
gi_545778205_gb_U000 4168721 GUAAGGUGAUAUGAACCgUUAUAACCGGCGAUUUCCGAAUGGGGAAACCCAGUGUGUUUCGACAcacuAUCAUUAACUgaa 4168801
*****************445689****************************888887777776689999999999988999 PP
NC
..........>>>>>,,,,,,<<<<<<-----<<____>>------>>>>>->,,,,,,,,,<<____>>,,,<<<<<--- CS
RF02540 154 ..........gggagcGGGAACcCcccGAAuuGAAaCAUCUuAGUAgggGgAGGAaaAGAAAcCAAuuGgGAUgcCgcuAG 224
::::: G GAACC::::GAA UGAAACAUCU AGUA::::GAGGAAAAGAAA:CAA +G:GAU:CC:C AG
gi_545778205_gb_U000 4168802 uccauagguuAAUGAGGCGAACCGGGGGAACUGAAACAUCUAAGUACCCCGAGGAAAAGAAAUCAACCGAGAUUCCCCCAG 4168882
9********9*********************************************************************** PP
NC
--<<_____>>---->>>>>,,[[[[,,,,~~~~~~,,,,,,,,,,((((------((((------------(((,,,<-< CS
RF02540 225 UAgcGGCGAgcGAAAgcGgcauAGccCAAA*[34]*uGUugugggccggcuuuaaugcgccuaguuaaugaAgccGAAgUg 333
UAGCGGCGAGCGAA G:GG: AGCCCA A UG + ::G + U + ++AG::GAAG :
gi_545778205_gb_U000 4168883 UAGCGGCGAGCGAACGGGGAGCAGCCCAGA*[ 3]*UGAAU---------------CAGUG--UGUGUGUUAGUGGAAG-C 4168942
******************************...5..66554...............88888..77888899********.* PP
NC
<<<______>>>>>,,<___>,<<<_______>>>,,,)))------------))))----)))),,,,,,,,,,,<<<<< CS
RF02540 334 gccUGGAAuggcccgccauAgAGGGUGAuAGcCCCGUAggcguAaucuaaaaggcgcuugagccguuuccaGAGUAcCgcg 414
G CUGGAA+G C:CGC:AUA:AGGGUGA AGCCCCGUA::C +AA + A A C::U + U +GAGUA:: C
gi_545778205_gb_U000 4168943 GUCUGGAAAGGCGCGCGAUACAGGGUGACAGCCCCGUACACAAAAAUGCACAUGCUGUGAG----CUCGAUGAGUAGGGCG 4169019
************************************************9999999998777....8999************ PP
NC
<<___..._____>>>>>>>,,,,,,<<<<<_______>>>>>,,]]]],,,,,}}-}}}}.}}-}},,,,,,,,,,,,,, CS
RF02540 415 ggUUG...GaauUcccgcGgGAAuaugGggGgcAucaaCccCcAAggCUAAAUACguCcCg.AGACCGAUAGcGaAcuAGU 491
GG G ++UCC G ::GAAUAUGG:GGG A CA CC:CCAAGGCUAAAUAC: C::: :GACCGAUAG+GAAC AGU
gi_545778205_gb_U000 4169020 GGACAcguGGUAUCCUGUCUGAAUAUGGGGGG-ACCAUCCUCCAAGGCUAAAUACUCCUGAcUGACCGAUAGUGAACCAGU 4169099
**76422367788****************997.89999*******************987636****************** PP
vv NC
,<<____>>,,,,}}--------------.-----------.--------}-----}}}}}}}}}},,,,,,,<<<<<<<< CS
RF02540 492 AccGUGAggGAAAGCUGAAAAGuAcCccu.gaaGGGggGUG.AAAAGaGCCUGAAACcgggcgGcgAuagaauggcgcggC 570
ACCGUGAGGGAAAG: GAAAAG+ACCCC+ AGGGG GUG AAAAGA CCUGAAACCG:G:::: A+A +G G GC
gi_545778205_gb_U000 4169100 ACCGUGAGGGAAAGGCGAAAAGAACCCCGgCGAGGGGAGUGaAAAAGAACCUGAAACCGUGUACGUACAAGCAGUGGGAGC 4169180
*****************************8889999999998899************************************ PP
vv v v v v v v NC
<<-~~~~~~>>>>>>>>>>,,<<<<________>>>>{{{{{{,,,,(((((((((((((,,<<<<--<<<<_____>>>> CS
RF02540 571 ccg*[61]*ggGucgcgccgUcCGUuUuGAAaaACGggCCgGGGAGUucgcggccguGgCGAGccUAAgggguuuAacccc 706
:CG G:GU C CGU C UUUUG A AA G G:C:G GA UU:::::C:G :GC AG::UAA:: : A: ::
gi_545778205_gb_U000 4169181 ACG*[ 7]*GUGUGACUGCGUACCUUUUGUAUAAUGGGUCAGCGACUUAUAUUCUGUAGCAAGGUUAACCGA----AUAGG 4169258
*97...8..9***********************************************************954....4669* PP
NC
-->>>>,,,<<____>>,,,,,~~~~~~~~~~~~,,,,))))))))))))),,[[-[---[[[[[[,,,(((((((((((( CS
RF02540 707 GaAggCGuAGgGAAAcCGAuaa*[26]**[16]*uggAGuCacggccgcgaGACCaGAAaCCgggCGAUCUaggCccggGC 817
G A::CG+AGGGAAACCGA U++AGU: C:G:::::AGACC+GAAACC:GG:GAUC AG:C::: GC
gi_545778205_gb_U000 4169259 GGAGCCGAAGGGAAACCGAG--*[ 7]**[ 6]*UUAAGUUGCAGGGUAUAGACCCGAAACCCGGUGAUCUAGCCAUGGGC 4169338
******************96.....9.....*..9********************************************** PP
v v v v NC
,<<<<---<<<<<<<____>>>>>>>---->>>>,,,,<<<<-<<-<<________>>>>>>>>,,)-))))))))))),< CS
RF02540 818 AGGgcGAAgccgggcgaAAgcccgguGGAGgcCCGauAggggUgcUGaugUGCAAauCgcccccgUGACccggGccuAGGG 898
AGG::GAAG::::G AA C::::UGGAG::CCGA A::G :: :: UG AAA:::: C::+UGAC :::G:CU GGG
gi_545778205_gb_U000 4169339 AGGUUGAAGGUUGGGUAACACUAACUGGAGGACCGA-ACCGACUA-AUGUUGAAAAAUUAGCGGAUGACUUGUGGCUGGGG 4169417
************************************.*****999.9********************************** PP
vv v NC
<<_____>>>,,,,,,]]]]]]------]-]],,[[[[[[,,,,<<<<<____>>>>>,<<<<<<<---<<<-<<<<<<<< CS
RF02540 899 GcgAAAGgCCAAUCuAGcccGGuaAuAGCUGGUUCCcgcCGAAacggccCgcAggccgacCccggcgGAGgcuGgcggcgg 979
G:GAAAG:CCAAUC A:CC:GG +AUAGCUGGUUC:C:CCGAAA::::: + :::::+CC:CG:: : C+::::::G
gi_545778205_gb_U000 4169418 GUGAAAGGCCAAUCAAACCGGGAGAUAGCUGGUUCUCCCCGAAAGCUAUUUAGGUAGCGCCUCGUGAA-UUCAUCUCCGGG 4169497
*****************************************************************964.55679******* PP
v vvv vvv v v vv NC
----<<<----<<<<<<<<<<--~~~~~~>>>>>>>>>>--->>->---->>>>>>>>>>>------>>>>>>->,,,<<< CS
RF02540 980 gGUAGaGCACugaccGggggguu*[18]*cccccCggucaAACuCCGAAcccgccgcCgcCGuAGAagccggGAgucgGgc 1072
GGUAGAGCACUG ::GG + ++ CC:: CAAACU CGAA+ C:::::: : A+::CG:GAG C+ :C
gi_545778205_gb_U000 4169498 GGUAGAGCACUGUUUCGGC---A*[21]*AACCCGAUGCAAACUGCGAAUACCGGAGA--AUGUUAUCACGGGAGACACAC 4169588
****************993...2...3..34599********************9987..45566889************* PP
NC
<<<<<<__._____>>>>>>>>>,,,,<<<______>>>,,,((((.(((---(((------(-((((((----------- CS
RF02540 1073 gcccgggG.UAAGcccgggcgcCGaGAGGGgaACAACCCAGAccgg.GGUUAAGGuCCCuAAgUgccGGcUAAGUGucAau 1151
G C:G: G UAA :C:G CG: AGAGGG+AACAACCCAGACCG: :G:UAAGGUCCC AAGU:::GG:UAAGUG
gi_545778205_gb_U000 4169589 GGCGGGUGcUAACGUCCGUCGUGAAGAGGGAAACAACCCAGACCGCcAGCUAAGGUCCCAAAGUCAUGGUUAAGUGGG--- 4169666
****9977478888*******************************55*****************************95... PP
v vv NC
-----(((-((((((((((-------(((((,<<<--<<<_________>>>-->>><___><---<<______>>->,)) CS
RF02540 1152 cuaAAGgguGuccccggcCuaAGACAgCggGgaGGUagGCUuAGAAGCAGCcAUCCucUAAgGAgUGCGUAAcAGCUCACc 1232
AAA:G UGU :: G C AGACA:C::GGA GU GGCUUAGAAGCAGCCAUC U:UAA:GA GCGUAA AGCUCAC:
gi_545778205_gb_U000 4169667 --AAACGAUGUGGGAAGGCCCAGACAGCCAGGAUGUUGGCUUAGAAGCAGCCAUCAUUUAAAGAAAGCGUAAUAGCUCACU 4169745
..568**************************************************************************** PP
vv v NC
)))---)))))))))))))--------.-----------))))))))))---)))))))<<<<<<<________>>>>>-- CS
RF02540 1233 cGcCGAGgccgggggCccCgAAAAUGg.aCGGGGCUuAAgCCggccaCCGAuACCccggggcgcgcuuauuaaagcgcgAu 1312
:G:CGAG C :: GC C:GAA AUG ACGGGGCU AA:CC:::CACCGA :C::CGG:: : :C +U+++ G: :
gi_545778205_gb_U000 4169746 GGUCGAGUCGGCCUGCGCGGAAGAUGUaACGGGGCU-AAACCAUGCACCGAAGCUGCGGCAGCGACGCUUAUGCGUUGU-- 4169823
**************************9788888888.89**********************655555555555555555.. PP
v v NC
>>,,,,]]]]]]<-<<<<<.<<<<<------<<<<<<<<____>>>>>>>>--->>>>>>>>>>-->,,,,,}}}}}},,, CS
RF02540 1313 ccgGUAGgcgGGCGucccg.cccGGguaGAAgccgGgccGuGAggcCcgguGGACCgggcgggaauGaaaAUCCcGGcggu 1392
::GGUAGG:G:GCGU:C:G : : GAAG: :GC:GUGA:GC: :UGGA: :C:G:A UG++AAU C:G:C+
gi_545778205_gb_U000 4169824 UGGGUAGGGGAGCGUUCUGuAAGCCUGCGAAGGUGUGCUGUGAGGCAUGCUGGAGGUAUCAGAAGUGCGAAUGCUGACAUA 4169904
*******************445688889***************************************************** PP
NC
,,,,,,,,,,,,<<<<<<_______>>>>>>{{{{,,,,{{{{,,{{,,,<<<<<<---<<_____>>->>>>>>,,,,,, CS
RF02540 1393 AGUAgCAGCaaAGuggGGUGAGAAUCCccaCcGCCGaAaGgGCaAGGGUUccccGGCAAuGuUcGUCaGCCggggGUUAGu 1473
AGUA+C G AA:::GGGUGA AA CCC:::CGCCG AAG::CAAGGGUUCC:: :CAA:GUU +UC:G: ::GGGU AGU
gi_545778205_gb_U000 4169905 AGUAAC-GAUAAAGCGGGUGAAAAGCCCGCUCGCCGGAAGACCAAGGGUUCCUGUCCAACGUUAAUCGGGGCAGGGUGAGU 4169984
****99.66799********************************************************************* PP
v v v v NC
[[[,<<.---<<<<<<<<<_____>>>->>>>>>---->>,,,<<<<<________>>>>>,,((((((((---------- CS
RF02540 1474 CGGUCC.UAAggcgggccguAAcucggacccgccGAAaGGGAAgcgGGUUAAUAUUCCcgcgCcgcgggggUaggugcggu 1553
CG: CC UAAG:C :G:C: AA :G: : G:CGA +GGGAA:C:GGUUAAUAUUCC:G:+C::: :G:: +G+G
gi_545778205_gb_U000 4169985 CGACCCcUAAGGCGAGGCCGAAA-GGCG-UAGUCGA-UGGGAAACAGGUUAAUAUUCCUGUACUUGGUGUUACUGCG---- 4170058
***76539999999988888777.9995.6789985.799*******************************544422.... PP
vv v v v v NC
---------------(((---(((((((((--(((((<<<<<<..________>>>>>>,.,,<<<<-----<<<<<<<<< CS
RF02540 1554 AacgcaagccuaauucccGACgccucggGgUAggccgggcggg..gcuguCgucccgccu.AAgcgcuuAAgcccggcgag 1631
AA ::GAC: : GG:UA:G::G::CGGG +C GU GUCCCG::U AA:CG: UA GC: G :::
gi_545778205_gb_U000 4170059 -----------AAGGGGGGACGGAGAAGGCUAUGUUGGCCGGGcgACGGUUGUCCCGGUUuAAGCGUGUAGGCUGGUUUUC 4170128
...........3345888************************995566666669999986277888888888876666666 PP
v v v v v v vv NC
-<<<_____>>>->>>>>>>.>>----->>>>,,,,,,,,,,,<____..>,,,,,,,)))))---)))))))))------ CS
RF02540 1632 agcCGUAAUGgcGcgagccg.ggugAAggcgcgAuugGcuuuccgUaa..ggagagUUcggccgAucCccggggcCCaUGA 1709
:: AAU:: G ::: C :G+ AG:CG:GAU++ C: UA :G +++ C::C:+AU:CC : :CCA GA
gi_545778205_gb_U000 4170129 CAGGCAAAUCCGGAAAAUCAaGGCUGAGGCGUGAUGACGAGGCACUACggUGCUGAAGCAACAAAUGCCCUGCUUCCAGGA 4170209
6666667888866666666643567777888888888777777666655588899999*********99887777777788 PP
v v NC
---.))).------------)))))))),]]],,}},,,,,<<______>>,}}}},<<<<_______>>>>,}}}},,,{ CS
RF02540 1710 AAA.ggg.auugggaaugAucccccgcguCCGUACCgAGAaCCGACACAGGUGCcCcugGcUGAGaAGgCcaAGGCgUaUc 1788
AAA :: ++G + G U::C: :::+:CGUACC AACCGACACAGGUG::C GG: GAGAA :CCAAGGCG + :
gi_545778205_gb_U000 4170210 AAAgCCUcUAAGCAUCAGGUAACAUCAAAUCGUACCCCAAACCGACACAGGUGGUCA-GGUAGAGAAUACCAAGGCGCU-U 4170288
87744444666667778889************************************7.*******************86.9 PP
v v NC
{{{-----{{{{{{{{-{{{,,,,,,,,,,,,,,<<<<<---<<____>>---->>>>><<<<<<<<<._______..... CS
RF02540 1789 GGguauAAcccgggcgAGGgAAuUCGGCAAAuUagccCCGUAccUUcGggAgAAGGggugCCuGcggc.uuggaaa..... 1863
G:G A AAC:CGGG:GA:GGAA+U GGCAAA U+:::CCGUA:CUUCGG:AGAAGG:::GC:::: : G +A
gi_545778205_gb_U000 4170289 GAG-AGAACUCGGGUGAAGGAACUAGGCAAAAUGGUGCCGUAACUUCGGGAGAAGGCACGCUGAUAUGuAGGUGAGguccc 4170368
***.99*******************************************************99998775433333367788 PP
v v v NC
..............>>>>>>>>><___>,,,,,,,[[[[[[[[[,,<<<_________>>>,,<<<<<<<<<--<<<<___ CS
RF02540 1864 ..............gccgCaGGuCGCAGUGACuAGGGggccCcgACUGUUUAauAAAAACAuAggcccCcGCuAgcCCGaA 1930
: ::::GUCG AG AC AG::GGC: C:ACUGUUUA UAAAAACA A:::C :::C+A C:CGAA
gi_545778205_gb_U000 4170369 ucgcggauggagcuGAAAUCAGUCGAAGAUACCAGCUGGCUGCAACUGUUUAUUAAAAACACAGCACUGUGCAAACACGAA 4170449
888888888888776789999************************************************************ PP
v NC
_>>>>-->-->>>>>>>>,,((((,<<<--<<<<<<<--<<<----~~~~~~---->>>>>>>>-->>>>><<<<<<____ CS
RF02540 1931 AGGgcguGUACgGgggccGAcuCCUGcCCAgugccGGUAccuGAAa*[16]*cgAAgggCCgguaAacGgCGgGgGUAACU 2021
AG:G GUA::: G:::GAC:CCUGCCC GUGCCGG A::U AA CGAAG::CCGGUAAACGGCGG::GUAACU
gi_545778205_gb_U000 4170450 AGUGGACGUAUACGGUGUGACGCCUGCCCGGUGCCGGAAGGUUAAU*[31]*CGAAGCCCCGGUAAACGGCGGCCGUAACU 4170555
********************************************99...9..689************************** PP
NC
___>>>>>><___>,,,,,,,,,,,,,,,<<<<<<_____>>>>>>,,,,,,,,,,)))),,,]]-]]]]]]],,,,}}}- CS
RF02540 2022 aUGACcCuCuUAAgGUAGCgaAAUaCCUuGcCGgcUaAgUgcCGgCuuGcAUGAAuGGaguAAcgAGggccCCACUGuCCc 2102
AU AC::UC:UAA:GUAGCGAAAU+CCUUG:CGG:UAAGU:CCG:C UGCA GAAUGG:GUAA:GA :GCC:: CUGUC:C
gi_545778205_gb_U000 4170556 AUAACGGUCCUAAGGUAGCGAAAUUCCUUGUCGGGUAAGUUCCGACCUGCACGAAUGGCGUAAUGAUGGCCAGGCUGUCUC 4170636
********************************************************************************* PP
NC
}}}}}}}}-}}}},,,,,,,,,,,,,<<<<<________>>>>>,,{{{{{{{{-{{{-{{,,,,,,{{{{-{{{{{{{,( CS
RF02540 2103 cgcccgggacCCggUGAAcuuacugugccgGuGcAcAguCcggcgacccCcggcggGgAGcGAAGACCCcgUgGAgCUUUA 2183
C:CCCG:GAC:C:GUGAA+UU ++ U: C:GUG A+A C:G : ACCC CGGC+:G: G: AAGACCCCGUG:A:CUUUA
gi_545778205_gb_U000 4170637 CACCCGAGACUCAGUGAAAUUGAACUCGCUGUGAAGAUGCAGUGUACCCGCGGCAAGACGGAAAGACCCCGUGAACCUUUA 4170717
********************************************************************************* PP
v v NC
(((---(((((((,,<<<<<<<<<<<<<<<<<<---------<<<<<--<<<---------<<<<<____>>>>>------ CS
RF02540 2184 CuGCAGcCugccguUGgggcgcggccgcgggcgcguAGuGUAGguGGGAGccguugaagcccccccuccggggggggugGA 2264
CU: AGC: G:C: UG:::::::: C :::::G+GUAG UAGGUGGGAG:C UUGAAG+ ::C CC+G:: UGGA
gi_545778205_gb_U000 4170718 CUAUAGCUUGACACUGAACAUUGAGCCUUGAUGUGUAGGAUAGGUGGGAGGCUUUGAAGUGUGGACGCCAGUCUGCAUGGA 4170798
********************************************************************************* PP
v v v v NC
>>>------------>>>>>>>>>>>>>>>>>>>>>>>,,,<<<<._____..........>>>>,,,,,)))))))---- CS
RF02540 2265 ggCgacaaUGaaACACCacCcgcccgcggccgcgcccCUaACccc.uaaaa..........gggGGACAucggcaGgUGGG 2334
G:CGAC UGAAA ACCACCC::::: G ::::::::CUAAC:: ::GGACA :G:C :GUGGG
gi_545778205_gb_U000 4170799 GCCGACCUUGAAAUACCACCCUUUAAUGUUUGAUGUUCUAACGUUgACCCGuaauccggguUGCGGACAGUGUCUGGUGGG 4170879
*******************************************99755444567888888899****************** PP
NC
)))),,<<<<_____>>>-><<<<<<___________>>>>>>,,[[,,,,((((((<<-<<<<<<_______>>>>>>-- CS
RF02540 2335 CaGUUuGGcuGGGGCggCACgCccccGAAAAgaUAuCggggGcGCCCaAAGgucggCUCAggcGGguCAGAAacCCgccGu 2415
:AGUUUG:CUGGGGCGG: C:CC:CC AAA +UA+CGG:GG:GC:C AAGGU:GGCU A::C G:UC GA A:C G::G
gi_545778205_gb_U000 4170880 UAGUUUGACUGGGGCGGU-CUCCUCCUAAAGAGUAACGGAGGAGCACGAAGGUUGGCUAAUCCUGGUCGGACAUCAGGAGG 4170959
******************.************************************************************** PP
vv vv NC
->><<______>>,,,,)))))),,,,<<<<<<<<<_________>>>>>>>>>,<-<____>->,]],,,,,,,,,,<<< CS
RF02540 2416 AGAGcGcAAGGgCAAAAGccggccUGACugggccccuaAaagcaaggggcccaGaggcGAAAgccgGGcCUAGCGAACccc 2496
AG:GCAA G:CA AAGCC:GC+UGACUG: :C:U A+ G :G: :CAG :GCGAAAGC:GG:C UAG GA CC:
gi_545778205_gb_U000 4170960 UUAGUGCAAUGGCAUAAGCCAGCUUGACUGCGAGCGUGACGG---CGCGAGCAGGUGCGAAAGCAGGUCAUAGUGAUCCGG 4171037
************************************988765...************************************ PP
NC
<<-<<<<<_______>>>>>>>>>>,,,,,...,,,,}}}}}--}}}}}},,,,,,,,<<<-<<<<<<<<---<<______ CS
RF02540 2497 cguGcCcccuuggUGggGgCcggggAuGAC...AGAAAAGcUACCccgGGGAUAACaGagucgucgCgGGCgAGAGcuCau 2574
:G G C: G :G CC: :G U A A AAAAG:UAC:CCGGGGAUAACAG::U :U::CG: C+AGAG+UCAU
gi_545778205_gb_U000 4171038 UG-GUUCUGAAUGGAAGGGCCAUCGCUCAAcggAUAAAAGGUACUCCGGGGAUAACAGGCUGAUACCGCCCAAGAGUUCAU 4171117
**.999999999999**********987753337789******************************************** PP
NC
_>>--->>>>>>>-->>>>,,,,,,,,,,(((((((((((,,<<--<<<<<______>>>>>---->>,<<<<<_____>> CS
RF02540 2575 AUCGACCCcGcgguUugcuACcUCGAUGUCgGcucuccCcAUCCUGGcgguGCAGcAgccgCCAAGGGUcgGGcUGuUCgC 2655
AUCGAC :CG::GUU:G::ACCUCGAUGUCGGCUC::C CAUCCUGG: :UG AG AG: :CCAAGGGU::GGCUGUUCGC
gi_545778205_gb_U000 4171118 AUCGACGGCGGUGUUUGGCACCUCGAUGUCGGCUCAUCACAUCCUGGGGCUGAAGUAGGUCCCAAGGGUAUGGCUGUUCGC 4171198
********************************************************************************* PP
NC
>>>,,,,,)))))--)--))))-),,,,,<<<<<<<____>>>->>>>,,,,}}--}}}}}}}}}}},,,,((((((((-- CS
RF02540 2656 CcgUUAAAgGggaaCgUGagCuGGGUUuAGacCGuCGuGAGaCAGguCGGuugCUacCcgccgGgggUGuugGccGcCUGA 2736
C::UUAAAG G::ACG GAGCUGGGUUUAGA:CGUCGUGAGACAG:UCGGU :CUA:C:GCCG GGG G UGG::::CUGA
gi_545778205_gb_U000 4171199 CAUUUAAAGUGGUACGCGAGCUGGGUUUAGAACGUCGUGAGACAGUUCGGUCCCUAUCUGCCGUGGGCGCUGGAGAACUGA 4171279
********************************************************************************* PP
v v NC
((((,,<<<<<<<<_______________>>>>>>>><<<<<---<<<----<<<<<<<<<<.____.>>>>>-->>>>>- CS
RF02540 2737 gGGgAAGgcgccccUAGUACGAGAGGAACggggcgcCgggGCCuCugGUgUAcCGGuuGuCc.Gaua.gGgCaaugCCGgG 2815
GGGG :: C:CCUAGUACGAGAGGA CGG:G ::+:G:::C+CU:GUGU C:GGUUGUC: G +A :GGCA UGCC:GG
gi_545778205_gb_U000 4171280 GGGGGG-CUGCUCCUAGUACGAGAGGACCGGAGUGGACGCAUCACUGGUGUUCGGGUUGUCAuGCCAaUGGCACUGCCCGG 4171359
****86.******************************************************85655558************ PP
NC
--->>>->>>>>,,.<<<----<<<<<___________>>>>>---->>>,))))------)))))))),........... CS
RF02540 2816 cAGCcacGCcccaa.gggaUAAggGCUGAAaGCAUCUAAGCccGAAacccucCCcGAAAAgAGgCggCcu........... 2884
+AGC:A :::C: A :GAUAAG:GCUGAAAGCAUCUAAGC:CGAAAC: CCCCGA A GAG::::CC
gi_545778205_gb_U000 4171360 UAGCUAAAUGCGGAaGAGAUAAGUGCUGAAAGCAUCUAAGCACGAAACUUGCCCCGAGAUGAGUUCUCCCugacccuuuaa 4171440
***********98889***************************************************************** PP
vv vv vv NC
.....,,,,,((((<<<<<_______>>>>>,,,,<<<<<<<<<<<--<--<<<<<--<______>-->>>>>>--->>>- CS
RF02540 2885 .....gauuAgGgcccccgUAgAAGAcggggUuGAUgGggcgGgGGUGuAAgccccgAGguuaauCGAggggcuuAGCCcg 2960
+ +AGG C:: G AGA GAC ::GUUGAU:G::CGG GUGUAA:C:C: G CGA:G:G:U AGC +
gi_545778205_gb_U000 4171441 gggucCUGAAGGAACGUUGAAGACGACGACGUUGAUAGGCCGGGUGUGUAAGCGCA--G------CGAUGCGUUGAGCUAA 4171513
*****999***********************************************9..9......9*************** PP
vv NC
>>>>>->>>,,,)))),,,,,}}}}::::: CS
RF02540 2961 CcgccaCcAAuagcCcgAaugcgcgauauu 2990
CCG::AC:AAU CCG +G::::A+ U
gi_545778205_gb_U000 4171514 CCGGUACUAAUGAACCGUGAGGCUUAACCU 4171543
****************************** PP
>> |
