Alignments: NC
{{{{{{{{,,,,,,{{{{{{{{{{-----{{{,,{{{{{{{{{{{[[,,,,,((((<<<________>>>,,,,,<<<<<<<- CS
RF02541 1 ggucaagcuauuAAggGCgcgcGGuGGAUGCCUuGGcgccgggaggCGAuGAgGGaCGcGguaagCugCGAuAAGCcccGggg 83
GGU:AAGC A UAA::G::C:CGGUGGAUGCC UGGC:::::GAGGCGAUGA:GGACG:G UAA CU:CGAUAAGC::CGG:
gi_545778205_gb_U000 225759 GGUUAAGCGACUAAGCGUACACGGUGGAUGCCCUGGCAGUCAGAGGCGAUGAAGGACGUGCUAAUCUGCGAUAAGCGUCGGUA 225841
*********************************************************************************** PP
NC
-<<<_______>>>----.->>>>>>>,,,)))),,,<<<____>>><<<<<<<______>>>>>>>,<<<<<<<<<______ CS
RF02541 84 AGccGcaAacAggCuuuG.AccCgggGAUuuCCcAAUgGGGaAACCcgcccgggguaauacccgggcAcccccggccGAAuac 165
AG::G +A A::C UU A:CCG::GAUUUCC:AAUGGGGAAACCC:::::G: ++ :C:::::A:C:::::C:GAAU C
gi_545778205_gb_U000 225842 AGGUGAUAUGAACCGUUAuAACCGGCGAUUUCCGAAUGGGGAAACCCAGUGUGU--UUCGACACACUAUCAUUAACUGAAUCC 225922
**************88877***********************************..6778*********************** PP
NC
___>>>>>>>>>,]],,,<<<<<<-----<<____>>------>>>>>->,,,,,,,,,<<____>>,,{<<<<<-----<<_ CS
RF02541 166 AUAggccgggggaGcaAACccgGgGAAcUGaAACAuCUaAGUAcCcggAGGAAAAGAAAgcAAaagcgAuuCCccuAGUAGcG 248
AUA:G:::::G:+GC+AACC:GGGGAACUGAAACAUCUAAGUACCC:GAGGAAAAGAAA:CAA G:GAUUCCCC AGUAGCG
gi_545778205_gb_U000 225923 AUAGGUUAAUGAGGCGAACCGGGGGAACUGAAACAUCUAAGUACCCCGAGGAAAAGAAAUCAACCGAGAUUCCCCCAGUAGCG 226005
*********************************************************************************** PP
v NC
____>>---->>>>>,,[[[[,,,,<<<<<<<________>>>>>>>,,,,,,(((-(((((-------(((((((((((((- CS
RF02541 249 GCGAgCGAAaggGGaauaGcCcAAACcggggguuauuguucccccgGGGUugugGGacccccaaauuaagagccccccggcuA 331
GCGAGCGAA+GGGGA +AGCCCA :::C + +A+:AG: ::::: :UA
gi_545778205_gb_U000 226006 GCGAGCGAACGGGGAGGAGCCCA----------------------------------GAGCCUG--AAUCAGUGUGUGUGUUA 226052
*********************98..................................9999988..899************** PP
v NC
(((,,,<<<<<______>>>>>,,<___>,<<<_______>>>,,,)))---)))))))))))))--)))))---))),,,,, CS
RF02541 332 gccGAAcggccUGGAAaggccgaCCauAGagGGUGAuAGuCCcGUAggcgaAagccggggggcucuuggggguauCCcgAGUA 414
G::GAA::G:CUGGAAAG:C::+C:AUA:AGGGUGA AG+CCCGUA::C AAA: ::::: :CU:U G:::+AU GAGUA
gi_545778205_gb_U000 226053 GUGGAAGCGUCUGGAAAGGCGCGCGAUACAGGGUGACAGCCCCGUACACAAAAAUGCACAUGCUGUGAGCUCGAU---GAGUA 226132
*******************************************************************99999998...***** PP
NC
<<<<<<<<<_______>>>>>>>>>,,,,,,<<<<<______>>>>>,,]]]],,},,}}-}}}}}}}-}},,,,,,,,,,,, CS
RF02541 415 gggCggggcAcGuGaAgccccGcccGAAuaugggggGACCAccccccAAGgCuAAaUAcuccccggcgACCGAUAGuGaAcuA 497
:G:C:GG::ACGUG ::CC:G:C:GAAUAUGG:GGGACCA+CC:CCAAGGCUAAAUACUCC:::::GACCGAUAGUGAAC A
gi_545778205_gb_U000 226133 GGGCGGGACACGUGGUAUCCUGUCUGAAUAUGGGGGGACCAUCCUCCAAGGCUAAAUACUCCUGACUGACCGAUAGUGAACCA 226215
*********************************************************************************** PP
NC
,,,<<____>>,,,,}},,,,,,,,,<<<<_____>>>>,,,,,,,,,,,,,}-----}}}}}}}}}},,,,,{,<<<<<<<< CS
RF02541 498 GUACCGUGAGGGAAAGGUGAAAAGaACCCcggugAgGGGAGUGAAAuAGaaCCUGAAACCgcgcGCccACAAgcaGucGcggc 580
GUACCGUGAGGGAAAGG GAAAAGAACCCCGG+GAGGGGAGUGAAA AGAACCUGAAACCG:G::C::ACAAGCAGU G:::C
gi_545778205_gb_U000 226216 GUACCGUGAGGGAAAGGCGAAAAGAACCCCGGCGAGGGGAGUGAAAAAGAACCUGAAACCGUGUACGUACAAGCAGUGGGAGC 226298
*********************************************************************************** PP
v v NC
<<<________>>>>>>>>>>>,,<<<<________>>>>{{{{{{,,,,(((((((((((((,,<<<<--<<<_____>>>- CS
RF02541 581 ccgauuuuaaucgggccgCggCGUcCcUUUUGuAuAAgGggcCggCGAgUugccgcgcgcggCaAGguUAAgccugauaggcG 663
::G UUA+ C::G:::C GCGU C:UUUUGUAUAA:G G:C:GCGA UU::: :::G::GCAAGGUUAA:C +AUA G:G
gi_545778205_gb_U000 226299 AUG--CUUAGGCGUGUGACUGCGUACCUUUUGUAUAAUGGGUCAGCGACUUAUAUUCUGUAGCAAGGUUAACC-GAAUA-GGG 226377
***..667777*************************************************************9.67777.99* PP
NC
->>>>,,,<<____>>,<<<<<_____>>>>>,,,,))))))))))))),,[[-[---[[[[[[,,,((((((((((((,<<< CS
RF02541 664 uAgcCGuAGcGAAAgCGcGuCcgAAuAgGgCgauuAGucgcgcgcggcaGACcCGAAACcggGuGAuCuaccCauggcCAGGg 746
+AGCCG+AG:GAAA:CG:GUC:+AA :GGC:+U+AGU::C::: :::AGACCCGAAACC:GGUGAUC A:CCAUG :CAGG:
gi_545778205_gb_U000 226378 GAGCCGAAGGGAAACCGAGUCUUAACUGGGCGUUAAGUUGCAGGGUAUAGACCCGAAACCCGGUGAUCUAGCCAUGGGCAGGU 226460
*********************************************************************************** PP
NC
<---<<<<<<<____>>>>>>>---->>>>,,,<<<-<<<<<________>>>>>>>>,,)-))))))))))),<<<_____> CS
RF02541 747 uGAAgccgggcUAAagcccgguGGAGgcCCGAACccacgcccGUUGAAAAgggcgggGAUGAgcuguGgguaGgGGcGAAAgg 829
UGAAG::: G:UAA+:C :::UGGAGG:CCGAACC:AC::::GUUGAAAA::::G:GGAUGA: UGUGG:U GGGG:GAAAG:
gi_545778205_gb_U000 226461 UGAAGGUUGGGUAACACUAACUGGAGGACCGAACCGACUAAUGUUGAAAAAUUAGCGGAUGACUUGUGGCUGGGGGUGAAAGG 226543
*********************************************************************************** PP
v NC
>>,,,,,,]]]]]]------]-]],,[[[[[[,,,,<<<<<____>>>>>,<<<<<<<<--<<<<<<<<<<<----<<<---< CS
RF02541 830 CCAAUCaAaCccgGaGAUAGCUgGUUCUCccCGAAAugccuUuAGgggcaGCgucgggcgaucccccccggcGGUAgaGCACu 912
CCAAUCAAACC:GGAGAUAGCUGGUUCUCCCCGAAA::::UUUAGG::::GC:UCG:G:+ UC::C:CCGG GGUAGAGCACU
gi_545778205_gb_U000 226544 CCAAUCAAACCGGGAGAUAGCUGGUUCUCCCCGAAAGCUAUUUAGGUAGCGCCUCGUGAACUCAUCUCCGGGGGUAGAGCACU 226626
*********************************************************************************** PP
v NC
<<-<<<<---<<<<<<<____.>>>>>->>--->>>>->>>-->>->---->>>>>>>.>>>-->>>>>>>>->,,,<<<<<< CS
RF02541 913 ggaugggcuAgGgggccuaaa.ggccuACcaAacccaaccaAACuccGAAUgccgggg.gggaaagcccggcAGucAgaccgc 993
G +U:GGC+AGGG:G:C + + G:C:UACCAA CC:A CAAACU CGAAU CCGG:G ::G++A:C:CGG:AG+CA:AC::C
gi_545778205_gb_U000 226627 GUUUCGGCAAGGGGGUCAUCCcGACUUACCAACCCGAUGCAAACUGCGAAUACCGGAGaAUGUUAUCACGGGAGACACACGGC 226709
*****************99989************************************99*********************** PP
NC
<<<<______>>>>>>>>>>,,,,<<<______>>>,,,((((-(((---(((------(-((((((-----------(((-( CS
RF02541 994 gggcGaUAAgguccgcggucgAgAGGGaAAcAaCCCAGAcCgcCagcUAAGGuCCCuAAgugcggGcUAAGUGggAAAGGcuG 1076
GGG:G+UAA :UCCG::GU:+AGAGGGAAACAACCCAGACCGCCAGCUAAGGUCCC+AAGU:::GG:UAAGUGGGAAA:G:UG
gi_545778205_gb_U000 226710 GGGUGCUAACGUCCGUCGUGAAGAGGGAAACAACCCAGACCGCCAGCUAAGGUCCCAAAGUCAUGGUUAAGUGGGAAACGAUG 226792
*********************************************************************************** PP
vv vv NC
(((((((((-------(((((,<<<--<<<_________>>>-->>><___><---<<______>>->,)))))---)))))) CS
RF02541 1077 uggggccgCuaAgACAaCcaGGAgGUUGGCUUAGAAGCAGCCAUCcUuuAAaGAguGCGUAAuAGCUCACugGuCaAGcggcc 1159
U:GG ::C AGACA:CCAGGA:GUUGGCUUAGAAGCAGCCAUC:UUUAAAGA++GCGUAAUAGCUCACUGG:C+AG:: C
gi_545778205_gb_U000 226793 UGGGAAGGCCCAGACAGCCAGGAUGUUGGCUUAGAAGCAGCCAUCAUUUAAAGAAAGCGUAAUAGCUCACUGGUCGAGUCGGC 226875
*********************************************************************************** PP
NC
)))))))--------------------))))))))))---)))))))<<<<<<<<._____>>>>>>>>,,,,]]]]]]<-<< CS
RF02541 1160 ccgCgCCGAaAAUguaaCGGGGCUcAAgCccgccaCCGAAgcugcGggcucgcgg.uuuaaccgcgagcGGUAGggGAGCguu 1241
C:GC:C:GAA AUGUAACGGGGCU AA:CC:::CACCGAAGCUGCGG:: C ::G UU++ C:: G ::GGUAGGGGAGCGUU
gi_545778205_gb_U000 226876 CUGCGCGGAAGAUGUAACGGGGCU-AAACCAUGCACCGAAGCUGCGGCAGCGACGcUUAUGCGUUGUUGGGUAGGGGAGCGUU 226957
************************.******************************888899********************** PP
vv vv NC
<<<<<.<<<------<<<<<<<<____>>>>>>>>--->>>>>>>>>>-->,,,,,}}}}}}{{-----{{,,,,,<<<<<<_ CS
RF02541 1242 ccgcc.cgcgguGAAggcgccccGuaAggggcgccGGAgcgggcggaaGuGAgaAUGccGgcacgAGUAgCGAuAAgggggGU 1323
C:G ::C+GUGAA:G: ::C:GU+A:G:: :C:GGAG:: C:GAAGUG GAAUGC:G:CA:+AGUA:CGAUAA:G:GGGU
gi_545778205_gb_U000 226958 CUGUAaGCCUGUGAAGGUGUACUGUGAGGUAUGCUGGAGGUAUCAGAAGUGCGAAUGCUGACAUAAGUAACGAUAAAGCGGGU 227040
***9999**************************************************************************** PP
v NC
______>>>>>>{{{{,,,,{{{{,,{{,,,<<<<<<---<<_____>>->>>>>>,,,,,,[[[[,<<---<<<-<-<<<__ CS
RF02541 1324 GAGAAuCcccccCGCCGaAAgcCcAAGGuUUCCuggguAAgGuUaaUCcgcccaGGGUuAGuCGggaCCUAAGgcGaGGccGA 1406
GA AA CCC:C:CGCCG AAG:CCAAGG UUCCUG :+AA:GUUAAUC:G: CAGGGU AGUCG: +CCUAAG:CGAGGCCGA
gi_545778205_gb_U000 227041 GAAAAGCCCGCUCGCCGGAAGACCAAGGGUUCCUGUCCAACGUUAAUCGGGGCAGGGUGAGUCGACCCCUAAGGCGAGGCCGA 227123
*********************************************************************************** PP
v NC
__>>>->->>>--->>,,,<<<<<________>>>>>,,(((((((((((-----((--((((((---((((--(((--(((( CS
RF02541 1407 aAggCGuAgcCGAUGGaaAgcgGGUuAAuAuUCCcgcaCcgcccggggccuuuaagcgacGgggcGACgcagaaggcuaggcg 1489
AAGGCGUAG:CGAUGG+AA:C:GGUUAAUAUUCC:G:AC::: :G:::C: GCGA:G:GG GACG:AGAAGGCUA:G::
gi_545778205_gb_U000 227124 AAGGCGUAGUCGAUGGGAAACAGGUUAAUAUUCCUGUACUUGGUGUUACU-----GCGAAGGGGGGACGGAGAAGGCUAUGUU 227201
**************************************************.....**************************** PP
NC
(<<<<<<__________>>>>>><<--<<<<---<<<.-<<<<<<<-<<_____>>>>>>>>>---.>>>--->>>>--->>, CS
RF02541 1490 cgcgggcuguuGGaagugcccgcccaagcccuuaggc.uggggggcAGguAAAucCgccccccaau.gccgaggggcgauggg 1570
::C:GG: G+ GG++GU:CC:G:::AA:C::+UA:GC + :::::CAGG+AAAUCCG::::: A+ GC:GAG::G:GAU::
gi_545778205_gb_U000 227202 GGCCGGGCGACGGUUGUCCCGGUUUAAGCGUGUAGGCuGGUUUUCCAGGCAAAUCCGGAAAAUCAAgGCUGAGGCGUGAUGAC 227284
*************************************999999999**********99999998888**************** PP
vv vv v v NC
<<<<<<<____>>>>>>>,,)))))---)))---))))--------))))))--))---.)))))))))))]]]],,}},,,, CS
RF02541 1571 ccgccgcuuaagcggcggaggcgccgaagccaugcugcCaaGAAAAgcccCgaagcuaa.ggccccgggcgccCGUACCguAA 1652
:C:CU+ +G:G: AG:::C:+A+GCC UGCU:CCA GAAAA CC:C:AAGC++ :G:::C: ::: :CGUACC +AA
gi_545778205_gb_U000 227285 GAGGCACUACGGUGCUGAAGCAACAAAUGCCCUGCUUCCAGGAAAAGCCUCUAAGCAUCaGGUAACAUCAAAUCGUACCCCAA 227367
*********************************************************989*********************** PP
NC
,<<______>>,}}}},<<<<_____>>>>,,}}}},,{{{{----{{{{{{{{-{{{,,,,,,,,,,,,,,<<<<<---<<_ CS
RF02541 1653 ACCGACACAGGUgGgcagGgaGAGaAucCcaAGGCGcucGgGagAAcccuggucAAGgAACUCGGCAAAaUagcccCGUAccU 1735
ACCGACACAGGUGG:CAGG:AGAGAAU:CCAAGGCGCU:G:GAGAAC:C:GGU:AAGGAACU GGCAAAAU+G::CCGUA:CU
gi_545778205_gb_U000 227368 ACCGACACAGGUGGUCAGGUAGAGAAUACCAAGGCGCUUGAGAGAACUCGGGUGAAGGAACUAGGCAAAAUGGUGCCGUAACU 227450
*********************************************************************************** PP
vv vv NC
___>>---->>>>><<<<<<................<<<<<<____>>>>>>...>>>>>><___>,,,,,,,[[[[[[[[[, CS
RF02541 1736 UcGggAgAAGgggcgCCccc................ccgggcguaagcccgg...gggGGccGCAgagAauaGGcccgggCGA 1799
UCGG:AGAAGG::C:C:::: G::CGU G::C ::::G:CG AGA A AG::::: :C:A
gi_545778205_gb_U000 227451 UCGGGAGAAGGCACGCUGAUauguaggugaagcgacUUGCUCGU-GGAGCU-gaaAUCAGUCGAAGAUACCAGCUGGCUGCAA 227531
********************997776666666555444444433.244444.488**************************** PP
vv NC
,<<<_________>>>,,<<<<<<<<<--<<<<____>>>>-->-->>>>>>>>,,((((,<<<--<<<<<<<--<<<---<< CS
RF02541 1800 CUGuUUAccAAAAaCACAggccucugCuAagucGuAAgacgAuGUAuaggggcuGAcGCCUGCCCGGUgCcgGAAGGuUAAgg 1882
CUGUUUA++AAAAACACAG::CU:UGC+AA::CG+AAG::GA+GUAUA:GG::UGACGCCUGCCCGGUGCCGGAAGGUUAA
gi_545778205_gb_U000 227532 CUGUUUAUUAAAAACACAGCACUGUGCAAACACGAAAGUGGACGUAUACGGUGUGACGCCUGCCCGGUGCCGGAAGGUUAAUU 227614
*********************************************************************************** PP
vv vv vv NC
-<<<<<<<--<<____>>--->>>>>>>->>--->>>>>>>>-->>>>><<<<<<_______>>>>>><___>,,,,,<---- CS
RF02541 1883 gccgggGuuAgcGcaAgcgAAgCcccggAccgAAgCCCcgGuAAACGGCGgCCGUAACUAUAACGGuCCUAAGGUAGCGAAAU 1965
G :G:GUUAGCGCAAGCGAAGC:C: A GAAGCCCCGGUAAACGGCGGCCGUAACUAUAACGGUCCUAAGGUAGCGAAAU
gi_545778205_gb_U000 227615 GAUGGGGUUAGCGCAAGCGAAGCUCUUGAUCGAAGCCCCGGUAAACGGCGGCCGUAACUAUAACGGUCCUAAGGUAGCGAAAU 227697
*********************************************************************************** PP
NC
-----<<<<<<_____>>>>>>>,,,,,,,,,)))),,,]]-]]]]]]],,,,}}}-}}}}}}}}-}}}}}}----}}},,,, CS
RF02541 1966 UCCUUGuCGGgUAAGUuCCGaCCuGCACGAAuGGCgUAACGAcccgggCgCUGuCUCgaccagggaCcCgGcGAAAguguAgU 2048
UCCUUGUCGGGUAAGUUCCGACCUGCACGAAUGGCGUAA:GA: :::::GCUGUCUC:ACC:G:GAC:C:G:GAAA:UG+A U
gi_545778205_gb_U000 227698 UCCUUGUCGGGUAAGUUCCGACCUGCACGAAUGGCGUAAUGAUGGCCAGGCUGUCUCCACCCGAGACUCAGUGAAAUUGAACU 227780
*********************************************************************************** PP
v NC
<<<<<________>>>>>,,{{{{{{{{-{{{-{{,,,,,,{{{{-{{{{{{{,((((---(((((((,,<<<<<<<<<<<<< CS
RF02541 2049 gccgGUgAAGAUGCcggcUaCcCgCggcugGACgGAAAGACCCCGUGgAcCUUUACUguAgccuggcauUGgcccccggcgcg 2131
: C:GUGAAGAUGC:G :UACCC:CGGC+:GACGGAAAGACCCCGUG:ACCUUUACU:UAGC::G:CA UG::C::::: : :
gi_545778205_gb_U000 227781 CGCUGUGAAGAUGCAGUGUACCCGCGGCAAGACGGAAAGACCCCGUGAACCUUUACUAUAGCUUGACACUGAACAUUGAGCCU 227863
*********************************************************************************** PP
v NC
<<<<<---------<<<<<--<<<------<<<<<<<<____>>>>>>>>--->>>------------>>>>>>>>>>>>>>> CS
RF02541 2132 gcccGUguAGgAUAgGuGGGAGgCuuuGAAgccggggcgcuAgccccggcGGAGcCaacguUGAaAUACCaCcCgggccgcgc 2214
: ::GUGUAGGAUAGGUGGGAGGCUUUGAA:::::G:CGC+AG:C:::::GGAGCC+AC UUGAAAUACCACCC:: :: : :
gi_545778205_gb_U000 227864 UGAUGUGUAGGAUAGGUGGGAGGCUUUGAAGUGUGGACGCCAGUCUGCAUGGAGCCGACCUUGAAAUACCACCCUUUAAUGUU 227946
*********************************************************************************** PP
NC
>>>>>>>>,,,<<<-<<<<<<_____>>>>>>>>>,,,,,)))))))----)))),,<<<<_____>>>><<<<<<_______ CS
RF02541 2215 cgggggcCUAACccagccccguaAuccggggcggGGACagugccagguGGGcAGUUUGaCuGGGGCgGuCgCCUCCuAAAgaG 2297
::::G::CUAAC::+ :CCCGUAAUCCGGG: ::GGACAGUG:C::GUGGG:AGUUUGACUGGGGCGGUC:CCUCCUAAAGAG
gi_545778205_gb_U000 227947 UGAUGUUCUAACGUUGACCCGUAAUCCGGGUUGCGGACAGUGUCUGGUGGGUAGUUUGACUGGGGCGGUCUCCUCCUAAAGAG 228029
*********************************************************************************** PP
NC
____>>>>>>{,[[,,,,((((((<<-<<<<<<_______>>>>>>--->><<______>>,,,,)))))),,,,<<<<<<<< CS
RF02541 2298 UAACGGAGGcGcgCaAAGGuuccCUCAgcgcGguuGGaAAcCgcgcguaGAGcGcAAaggCAuAAGggagCuUgACuGcccGa 2380
UAACGGAGG:GC:C+AAGGUU::CU:A:C::G:U+GGA A:C::G:G +:AG:GCAA+G:CAUAAG::AGCUUGACUGC::G:
gi_545778205_gb_U000 228030 UAACGGAGGAGCACGAAGGUUGGCUAAUCCUGGUCGGACAUCAGGAGGUUAGUGCAAUGGCAUAAGCCAGCUUGACUGCGAGC 228112
*********************************************************************************** PP
NC
<______>>>>>>>>>,<<<____>>>,]],,,,,,,,,,<<<<<<<-<<________>>>>>>>>>,,,,,},,,,,,}}}} CS
RF02541 2381 cugACAaguCgggCaGaggCGAAAGccGGccuUAGUGAUCCggcGGcuccgagUGGaAgggCCgucGCUCAACGGAUAAAAGg 2463
:UGAC ::C::GCAG+:GCGAAAGC:GG:C+UAGUGAUCCGG:GG:UC:GA+UGGAA:G:CC:UCGCUCAACGGAUAAAAGG
gi_545778205_gb_U000 228113 GUGACGGCGCGAGCAGGUGCGAAAGCAGGUCAUAGUGAUCCGGUGGUUCUGAAUGGAAGGGCCAUCGCUCAACGGAUAAAAGG 228195
*********************************************************************************** PP
NC
}--}}}}}},,,,,,,,<<<-<<<<<<<<---<<_______>>--->>>>>>>-->>>>,,,,,,,,,,(((((((((((,,< CS
RF02541 2464 UACcCCGGGGAUAACAGGCugAucccccCCAAGaGUuCAuAuCGACGggggggUUUgGCACCUCGAUGUCgGCUCauCgCAUC 2546
UAC:CCGGGGAUAACAGGCUGAU:CC:CCCAAGAGUUCAUAUCGACGG:GG:GUUUGGCACCUCGAUGUCGGCUCAUC:CAUC
gi_545778205_gb_U000 228196 UACUCCGGGGAUAACAGGCUGAUACCGCCCAAGAGUUCAUAUCGACGGCGGUGUUUGGCACCUCGAUGUCGGCUCAUCACAUC 228278
*********************************************************************************** PP
NC
<-<<<<<<______>>>>>>--->>,<<<<<_____>>>>>,,,,,)))))--)--))))-),,,,,<<<<<<<____>>>-> CS
RF02541 2547 CUGGGgCuGgAGuAgGuCCCAAGGGUucGGCUGUUCGCCgaUUAAAGcGguACGuGAGCuGGGUUcAGaaCGUCGUGAGACAG 2629
CUGGGGCUG+AGUAGGUCCCAAGGGU::GGCUGUUCGCC::UUAAAG:GGUACG+GAGCUGGGUU+AGAACGUCGUGAGACAG
gi_545778205_gb_U000 228279 CUGGGGCUGAAGUAGGUCCCAAGGGUAUGGCUGUUCGCCAUUUAAAGUGGUACGCGAGCUGGGUUUAGAACGUCGUGAGACAG 228361
*********************************************************************************** PP
NC
>>>,,,,}}--}}}}}}}}}}},,,,((((((((--((((,,<<<<<<<_______________>>>>>>><<<<<<---<<< CS
RF02541 2630 uuCGGUCCcUAUCcgccGcGgGcGuaGGaggccUGAggGgauccgccccUAGUACGAGAGGACCggggcgggCggaCCucugG 2712
UUCGGUCCCUAUC:GCCG:GGGCG +GGAG::CUGAGGGG +C::C:CCUAGUACGAGAGGACCGG:G::G:CG:A:C+CU:G
gi_545778205_gb_U000 228362 UUCGGUCCCUAUCUGCCGUGGGCGCUGGAGAACUGAGGGGGGCUGCUCCUAGUACGAGAGGACCGGAGUGGACGCAUCACUGG 228444
*********************************************************************************** PP
NC
----<<<<<<<<<<<____>>>>>>-->>>>>---->>>->>>>>>,,<<<----<<<<<___________>>>>>---->>> CS
RF02541 2713 UGuacCgGuuGucgcGCcAgcggCauugCcGgGUAGCcauGuccGcaaggGAUAAcCGCUGAAaGCAUCUAAGCGgGAAgCcc 2795
UGU C:GGUUGUC::GCCA::GGCA UGCC:GGUAGC:A+:U:CG:AA :GAUAA::GCUGAAAGCAUCUAAGC::GAA+C:
gi_545778205_gb_U000 228445 UGUUCGGGUUGUCAUGCCAAUGGCACUGCCCGGUAGCUAAAUGCGGAAGAGAUAAGUGCUGAAAGCAUCUAAGCACGAAACUU 228527
*********************************************************************************** PP
vv vv NC
,))))------)))))))),,<<<...._____>>>.,(--((((<<<<<_______>>>>>,,,,<<<<<<<<<<<--<--< CS
RF02541 2796 acCccAAGAuaAggccuCCcucgg....uaaauccg.uuaAGgccccuggaAGAcuAccaggUuGAuaGgccggcgGUGcAAg 2873
CCCC AGAU AG::CUCCCU::: U A +::: U AAGG C:U:GAAGAC AC:A:GUUGAUAGGCCGG GUG:AA:
gi_545778205_gb_U000 228528 GCCCCGAGAUGAGUUCUCCCUGACuccuUGAGAGUCcUGAAGGAACGUUGAAGACGACGACGUUGAUAGGCCGGGUGUGUAAG 228610
************************988656677999789******************************************** PP
vv vv NC
<<<<____>>>>>>--->>>->>>>>->>>,,,))))-),,,}}}}}}}}:: CS
RF02541 2874 cgcgGuAAcgcgcguAGCcgAccgguACuaAUaggcCgauaggcuugaccuu 2925
CGC:G+ A:GCG:: AGC ACCGGUACUAAU CCG AGGCUU:ACCUU
gi_545778205_gb_U000 228611 CGCAGCGAUGCGUUGAGCUAACCGGUACUAAUGAACCGUGAGGCUUAACCUU 228662
**************************************************** PP
>> |
