gi_545778205_gb_U000_129

"structRNAfinder"

gi_545778205_gb_U000_129
cmsearch-Rfam
Family : LSU_rRNA_eukarya	Id: RF02543	Type: Gene; rRNA;
Taxonomy: Eukaryota; Bacteria; Viruses; Archaea;	Ontology: GO:0003735 structural constituent of ribosomeRF02543
Description: not description
Score: 1248.7	E-value: 0
From sequence: 3426624	To sequence: 3423891
Alignments: NC :::::::::::::::::::::::<<<<<<-----<<____>>------>>>>>->,,,,,,,,,<<____>>,,,<<<<<- CS RF02543 1 ugacCUuaaaUcAgguaaGAuUAcCcgCuGAAuUUAAGCAUAUuAaUAaGcgGAgGAAAAGAAAcuAACaagGAUUcccuu 81 + CC UA+ U+A A+G ACC:G :GAA+U AA CAU U A UA: C:GAGGAAAAGAAA::AAC ::GAUUCCC: gi_545778205_gb_U000 3426624 AAUCCAUAGGUUAAUGAGGCGAACCGGGGGAACUGAAACAUCUAAGUACCCCGAGGAAAAGAAAUCAACCGAGAUUCCCCC 3426544 ******************************************************************************* PP v NC ----<<_____>>---->>>>>,,[[[[,,.<<<<<<<<<<<<<<<<_______>>>>>>>>>>>>>>>>,,,,((((((- CS RF02543 82 AGUAgcGGCGAgcGAAgagggAAuAGCcCA.cgcugcaacuccgcccucuuuuugggcggaguugcagcgUauaggggccu 161 AGUAGCGGCGAGCGAA :GGGA AGCCCA + G: :C: gi_545778205_gb_U000 3426543 AGUAGCGGCGAGCGAACGGGGAGCAGCCCAg----------------------A----------------GCCUGAAUCA- 3426502 **************************2......................2................4444664444. PP v vvvv vvvv v NC ((((-(((((((-(((((((,,,<-<<<<______>>>>>,,<___>,,<<_______>>,,,,,)))))))--))))))) CS RF02543 162 ccucagccgcggcccccgccuAAgUccccUgGAAuggggcaccAuAgAGGGUGAgAguCCcGUauggcgggguaccgcggc 242 G: :::G+ :: AAG C::CUGGAA G::GC C:AUA:AGGGUGA AG CCCGUA :: U C::: :C gi_545778205_gb_U000 3426501 -----GUGUGUGUGUUAGUGGAAG-CGUCUGGAAAGGCGCGCGAUACAGGGUGACAGCCCCGUACACAAAAAUGCACAUGC 3426427 .....4444444233333445666.**********************************986554444444444444 PP v NC -----))))))))-)),,,,,,,,<<<<<<<___..._____>>>>>>>,,,,.,<<<<<________>>>>>,,]]]],, CS RF02543 243 uuuaugaggggccuccaaaGAGUCGgGuugcUUG...ggAaUgcagCcCaAAg.UgGguGGUAaAuUuCauCcAAgGCUAA 319 U :G: :C A+GAGU :G : G: GG AU:C : C: AA+ UGGG:GG A + UC:UCCAAGGCUAA gi_545778205_gb_U000 3426426 UG-------UGAGCUCGAUGAGUAGGGCGGGACAcguGGUAUCCUGUCUGAAUaUGGGGGG--ACCAUCCUCCAAGGCUAA 3426355 44.......4444577999999999999998643111345678999999999845666665..45667999999*** PP NC ,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,<<____>>,,,,,,,,,,,,,,,<<<<__.__>>>>,,,,,,,,,,,,,, CS RF02543 320 AUAuuagcaaGAGACCGAUAGcgaACAAGUAccGUGAggGAAAGaUGAAAAGaACucuGA.AaagaGAGUUAAAuAGuAcg 399 AUA+U + A GACCGAUAG+GAAC AGUACCGUGAGGGAAAG GAAAAGAAC:C:G A:G:GAGU AAA AG AC gi_545778205_gb_U000 3426354 AUACUCCUGACUGACCGAUAGUGAACCAGUACCGUGAGGGAAAGGCGAAAAGAACCCCGGcGAGGGGAGUGAAAAAGAACC 3426274 ******************************************************87368999************* PP v v v NC ,,,,,,,,,,,,,,,,,,,,(~~~~~~~),,<<<<________>>>>{{{{{{,,,,(((((((((((((,,<<<--<<<< CS RF02543 400 UGAAAuuGuUaAgAgGgAAgc[225]gACCCGUCUUGAAACACGGACCAAGGAGUccaacauguguGCgAGuguuuggg 698 UGAAA++GU +A AAGC G CC U UUG A A GG::CA: GA U:::A::::: ::C+AG U+ :: gi_545778205_gb_U000 3426273 UGAAACCGUGUACGUACAAGC[ 29]GUACCUU-UUGUAUAAUGGGUCAGCGACUUAUAUUCUGUAGCAAGGUUAACC- 3426173 *******999999888876....6..4556644.788888899***************************99765. PP v v v NC <<____>>>>>>-->>>,,,<<____>>,,,,,,,~~~~~~~~~~~~,,,,))))))))))))),,[[-[---[[[[[[,, CS RF02543 699 ucauuAgacccauacgCGuAacgAAagugAauuaa[29]*[33]aaGAGCacacauguuggGACCCGAAAGauGGUGA 829 A UA :: A CG A::GAAA::GA U ++ AG:: :::::U:::GACCCGAAA:::GGUGA gi_545778205_gb_U000 3426172 -GAAUA---GGGGAGCCGAAGGGAAACCGAGU---[ 8][ 4]UUAAGUUGCAGGGUAUAGACCCGAAACCCGGUGA 3426099 .33444...66799**************974......8.......9******************************* PP v v v v NC ,((((((((((((,<<<<---<<<<<<<____>>>>>>>---->>>>,,,<<<<-<<-<<________>>>>>>>>,,)-) CS RF02543 830 ACUAugCcugggcAGggcGAAGccAGgGGAAACcCUggUGGAGgccCGuAgcgaUuCUGACGUGCAAAUCGaucgucagAc 910 C A::C:UG GCAGG::GAAG::: G AA C :::UGGAG::CCG+A:CG U: : UG AAA ::A CG: +GAC gi_545778205_gb_U000 3426098 UCUAGCCAUGGGCAGGUUGAAGGUUGGGUAACACUAACUGGAGGACCGAACCGACUA-AUGUUGAAAAAUUAGCGGAUGAC 3426019 ***************************99****************9887.777788898888899**** PP NC )))))))))),<<<_____>>>,,,,,,]]]]]]------]-]],,[[[[[[,,,,<<<<<____>>>>>,,(((((((,, CS RF02543 911 cuggGuaUAGGgGcGAAAGaCuAAUCGAACCauCUAGUAGCUGGUUcCcuCCGAAGuuUCCCUCAGGAuaGCuggagcuuu 991 UG:G::U GG:G GAAAG C:AAUC AACC::: UAGCUGGUUC:C:CCGAA ::U:: U ::A::GC: ::::: U gi_545778205_gb_U000 3426018 UUGUGGCUGGGGGUGAAAGGCCAAUCAAACCGGGAGAUAGCUGGUUCUCCCCGAAAGCUAUUUAGGUAGCGCCUCGUGAAU 3425938 *********************************************************************99999933 PP v v vv v v v v vv v v NC ,,,,,,,<<<<<<<<----<<<----<<<<<<<<<<--<<<<<<-<_____>->>>>>>.>>>>>>>>>>-->>->----> CS RF02543 992 uuuuuAGUcuuAuccGGUAAAGCgAAUGAuUAgaGGcuucggGgacgaAAugucCucga.CCuaUUcUCAAACUUUAAAUg 1071 U +A UCU:::: GGUA:AGC A UG :::: C+ : G:G+C + +G+C:U : +C:::: CAAACU : AAU gi_545778205_gb_U000 3425937 U---CA-UCUCCGGGGGUAGAGC-ACUGUUUCGG--CAAGGGGGUCAUCCCGACUUACCaACCCGAUGCAAACUGCGAAUA 3425864 2...22.************8.789887776..889999999*9999995543567777889********** PP NC >>>>>>>,<<<<<<<<<_________>>>>>>>>>,,,,,,,,,,,))))))),,,,,<<<<<<<<<<_.____>>>>>>> CS RF02543 1072 ggUaagAagccccgguuaCUUaauUGaaccggggcauuuaAuauaaagcuccaAGUGGGCCAcUUuUGG.UAAGCAgAAgU 1151 ::::AGAA UG U A::::: :AG C: :: G UAA :: : gi_545778205_gb_U000 3425863 CCGGAGAA----------------UG-----------------UUAUCACGGGAGACACACGGCGGGUGcUAACGUCCGUC 3425816 ***6................22.................33399999999987766666666665599966666666 PP v vv NC >>>,,,,<<<______>>>,,,(((.((-(---(((------(-(--(((------------------(((-((((((((( CS RF02543 1152 GGCGAUGcGGGAUGAACCgAAcGcc.ggGuUAAGGuGCcuaAgUgcacgCUcAUcuAGAuaCCAuAAAaGGUGUuggUuca 1231 G A :GG A AACC:A C: ::G:UAAGGU CC+AAGU:++:G:U A G AAA:G UGU GG : gi_545778205_gb_U000 3425815 GUGAAGAGGGAAACAACCCAGACCGcCAGCUAAGGUCCCAAAGUCAUGGUUAAGUGGG-------AAACGAUGUGGGAAGG 3425742 666666677777889999999459******************99997666.......799********* PP vv v NC (-------(((((,<<<--<<<_________>>>-->>><___><---<<______>>->,)))))---)))))))))))) CS RF02543 1232 UauaGACAGCaGgAcGGUGgccAUGGAAGUCggaAUCCgCUAAGGAGUGUGUAACAACUCAcCuGCCGAAugaAccaGCCC 1312 : AGACA C::G ::GU ::C U GAAG G::AUC:::UAA:GA G:GUAA A:CUCAC::G CGA: : CC GC C gi_545778205_gb_U000 3425741 CCCAGACAGCCAGGAUGUUGGCUUAGAAGCAGCCAUCAUUUAAAGAAAGCGUAAUAGCUCACUGGUCGAGUCGGCCUGCGC 3425661 ***************************************************************************** PP NC )-------------------)))--)))))---)-)))))<<<<<<<<<_________>>>>>>>>>,,,,]]]]]]<-<< CS RF02543 1313 uGAAAAUGGAUGGCGCUuAAGcguaccaCCuAUaCccggCCgucggggcAaauuuaaugccccgacGAGUAGGagGgcGug 1393 :GAA AUG A G G UAA:C:++:CACC A :C:::G C: C:::GC +AUGC:::G :G GUAGG:G:GCGU: gi_545778205_gb_U000 3425660 GGAAGAUGUAACGGGGCUAAACCAUGCACCGAAGCUGCGGCAGCGACGCU-----UAUGCGUUGUUGGGUAGGGGAGCGUU 3425585 ****9887777777999************************5.....566******************* PP vv vv NC <<<<<<.<<------<<----<<<____>>>--->>--->>>>>>>>>>-->,,,,,}}}}}},,,,,,,,,,,,,,<<<< CS RF02543 1394 gcGgcu.gcguuGAAgcuuugggcGUgAgccuggguGGAgcagcCgccaGUgCAGAUCUUGGUGGUAGUAGCAAAUAcUCa 1473 ::G : :C GAAG:U U G: GUGA :C G:UGGAG:: C:::AGUGC AU :UG:: AGUA C A A::C: gi_545778205_gb_U000 3425584 CUGUAAgCCUGCGAAGGUGU-GCUGUGAGGCAUGCUGGAGGUAUCAGAAGUGCGAAUGCUGACAUAAGUAACGAUAAAGCG 3425505 **99999999999766.******************************************************** PP NC <<_______>>>>>>{{{{,,,,,{{{{,,{{,,,<<<<<<---<<_____>>->>>>>>,,,,,,{{{,((.---(( CS RF02543 1474 AaUGAGAaCuUuGAggACuGAAGUGGaGAAGGGUUcCgugugAACaGuAgUuGaacacGgGUuAGUCGgUCC.UAAGg 1550 ::UGA AA :::G::::C:G A G:::AAGGGUUCC:: : AAC: UA+U:G+: ::GGGU AGUCG: CC UAA gi_545778205_gb_U000 3425504 GGUGAAAAGCCCGCUCGCCGGA-AGACCAAGGGUUCCUGUCCAACGUUAAUCGGGGCAGGGUGAGUCGACCCcUAA-- 3425430 ****************98.5******************************************8763666.. PP v NC ~~~~~~~~~~~~,,,,,))----)),,,<<<<<________>>>>>,,[[[[-[[[[[[[,,,,<<<<____>>>>,,,,, CS RF02543 1551 [17]*[21]auuuacCGAAAGGGAAgcgGGUUAAuAUUCCcgcACcuggacguggauuuuaugcgGuAAcgcaAaugA 1657 GGGAA:C:GGUUAAUAUUCC:G:AC:UG GU:::U A gi_545778205_gb_U000 3425429 [13][11]----------UGGGAAACAGGUUAAUAUUCCUGUACUUGGU-GUUACUGCG--------A--------- 3425365 ...6.....6............3*************************994.776655433........2......... PP v v vvv v v v v NC ,((((((---((((-(((((((-(((<<<<<<._________>>>>>>,,,<<<<<-----<<<<<<<<<<<<<_____>> CS RF02543 1658 acucggaGAcgccggcgggggccccgggaaGa.GUUuUCUUUuCuucuUAAcggccuauuuaCCcugcAaccgguUuaucc 1737 ::G:GACG :G :GG :: ::GG:::G: G U U:C:::UU A: : ++ :: : ::: C GG AUCC gi_545778205_gb_U000 3425364 -AGGGGGGACGGAGAAGGCUAUGUUGGCCGGGcGACGGUUGUCCCGGUUUAAGCGUGUAGGCUGGUUUUCCAGGCAAAUCC 3425285 .357899*******************997777788889999999887655554444477677777777899999999 PP v v v v vvv vv vv v v NC >>>>>>>>>>>----->>>>>,,,,,,<<<<<<<_____>>>>>>>,,)))---)))))))-))))---------)))))) CS RF02543 1738 ggaGguagGGuuuaauggccgGaAgAGcgccgcauuuuuugcggcgUCcggUgugcccccgacggcCCUUGAAAAuccgag 1818 G ::: : :: + : :GA GA ::::U :::: C:: + :: CC: C: CC AAA :C:: gi_545778205_gb_U000 3425284 GGAAAAUCAAGGCUGAGGCGUGAUGACGAGGCACUACG-GUGCUGAAGCAACAAAUGCCCUGCUUCCAGGAAAAGCCUCUA 3425205 77777766655555555555688888888899999888.9999999**************99888777777776543 PP v NC ,,,,,,,,,,,]]-]]]]]]]]],}}},,}},,,,,<<______>>,}}}},<<<<_____>>>>,,}}}},,{{{{---- CS RF02543 1819 GgAaggaauaaauuccacgccaggcCGUACCcAUAaCCGCAuCAGGUCuCCAAGGugAauAgCCUCUaGUcgAUAGAAuAA 1899 A+ + A: ::AC+ CA:+:CGUACCC AACCG CAGGU:::CA:G :GA +A: C: :G:: U:::A AA gi_545778205_gb_U000 3425204 --AGCAUC---AGGUAACAUCAAAUCGUACCCCAAACCGACACAGGUGGUCAGGUAGAGAAUACCAAGGCGCUUGAGAGAA 3425129 ..333333...4456777899********************************************************** PP NC {{{{{{{{-{{{,,,,,,,,,,,,,,<<<<<---<<____>>---->>>>><<<<<<<<<~~~~~~~-->>>>>>>>><__ CS RF02543 1900 gGUAGgUAAGGGAAGUCGGCAAAaUAGAUCCGUAaCUUcGGgAaAAGGAUUGGCUCUgAg[146]AAcUcAGAACUGGu 2119 : ::GGU:A:GGAA U GGCAAAAU :: CCGUAACUUCGGGA AAGG ::G CUGA: AA:UCAG U:G+ gi_545778205_gb_U000 3425128 CUCGGGUGAAGGAACUAGGCAAAAUGGUGCCGUAACUUCGGGAGAAGGCACG---CUGAU[ 31]AAAUCAG---UCGA 3425030 *************************************************9...66776....9..5667766...9* PP v v v v NC _>,,,,,,,[[[[[[[[[,,<<<_________>>>,,<<<<<<<<-<-<<<<_____>>>>->--->>>>>>>>,,((((, CS RF02543 2120 ACGGACaAGgGGAAUCcGACUGUuUAAUUAAAACAuAGcAUugcGAcGgcccgaAaggggcGgUGACgcaAUgUGAuUuCU 2200 A: AC AG: G: C:ACUGUUUA U AAAACA AGCA: G:: + C:CGAAA G:G A::C :UGUGA: :CU gi_545778205_gb_U000 3425029 AGAUACCAGCUGGCUGCAACUGUUUAUUAAAAACACAGCACUGUGCAAACACGAAA-GUGGACGUAUACGGUGUGACGCCU 3424950 ******************************************************.********************** PP NC <<<--<<<<<<-<--<<<----~~~~~~--->>>>>>>>-->>>>><<<<<<_______>>>>>><___>,,,,,,,,,,, CS RF02543 2201 GCCCAGUGCUcUGAAuGuCAAa[15]cAAgCgCgGGUAAACGGCGGGAGUAACUAUGACUCUCuUAAgGUAGCCAAAUG 2290 GCCC GUGC:: GAA:GU AA AAGC:C::GUAAACGGCGG GUAACUAU AC UC:UAA:GUAGC AAAU gi_545778205_gb_U000 3424949 GCCCGGUGCCG-GAAGGUUAAU[32]GAAGCCCCGGUAAACGGCGGCCGUAACUAUAACGGUCCUAAGGUAGCGAAAUU 3424844 *********.****98...9..689********************************************** PP NC ,,,,<<<<<<_____>>>>>>,,,,,,,,,,)))),,,]]-]]]]]]],,,,}}}-}}}}}}}}-}}}},,,,,,,,,,,. CS RF02543 2291 CCUCGUCAucUAAUUagUGACGCGCAUGAAUGgAuUAACgAGAUUCCcACUGUCCCUAcCUACcAUCUAGCGAAACCACA. 2370 CCU GUC:: UAA U ::GAC GCA GAAUG: :UAA:GA :C : CUGUC:C:ACC:: :A:::AG GAAA A gi_545778205_gb_U000 3424843 CCUUGUCGGGUAAGUUCCGACCUGCACGAAUGGCGUAAUGAUGGCCAGGCUGUCUCCACCCGAGACUCAGUGAAAUUGAAc 3424763 ***********************************************************************997773 PP v NC ,<<<<<________>>>>>,,{{{{{{{{-{{{-{{,,,,,,{{{{-{{{{{{{,[[[[---[[[[[[[,,<<<<<<<<<< CS RF02543 2371 GcCAAGGGAACGGGCUUGgaAccaucAGcGGGGAAAGAAGACCCUgUUGAGCUUGACUCUAGucuGgcaUUGugaagcgac 2451 C G GAA GC G+ACC: C:G: :G: :: AAGACCC:GU :A CUU ACU UAG:: G:CA UG:::A:::A gi_545778205_gb_U000 3424762 UCGCUGUGAAGAUGCAGUGUACCCGCGGCAAGACGGAAAGACCCCGUGAACCUUUACUAUAGCUUGACACUGAACAUUGAG 3424682 5**************************************************************************** PP v v v NC <<<<<<<<---------<<<<<--<<______.........................>>------------>>>>>>>>>> CS RF02543 2452 auggggGgUGUAGaAUAaGUGGGAGcuuuuag.........................gCGccagUGAAAUACCACuaCccc 2507 : :::: :UGUAG AUA:GUGGGAG:+UU+++ :CG+C UGAAAUACCAC:: ::: gi_545778205_gb_U000 3424681 CCUUGAUGUGUAGGAUAGGUGGGAGGCUUAGAaguguggacgccagucugcauggagCCGACCUUGAAAUACCACCCUUUA 3424601 ***********************99997*********************************************** PP v v v v NC >>>->>>>>>>>>>,,,((((~~~~~~)))),,,,,]]]]]]]----]]]],,<<<<_____>>>-><<<<<<________ CS RF02543 2508 cauugucgcuucaCUUAcucc[68]ggagGACAuugcCaggUGGGGAGUUUGgCuGGGGCgGcACAuCuGuuAAAuaAU 2650 : : U:::U:::CU AC:: ::GGACA UG:C ::UGGG AGUUUG:CUGGGGCGG: C :CU::UAAA A U gi_545778205_gb_U000 3424600 AUG-UUUGAUGUUCUAACGUU[16]UGCGGACAGUGUCUGGUGGGUAGUUUGACUGGGGCGGU-CUCCUCCUAAAGAGU 3424512 *.89********975...7..589*******************************.*********** PP v NC ___>>>>>>,,[[,,,,((((((<<-<<<<<<_______>>>>>>--->><<______>>,,,,)))))),,,,<<<<<<< CS RF02543 2651 AACgCaGgUGUCCUAAGGcgaGCUCAgcGaGgACAGAAAcCuCgcGUaGAgcAAAAGGgcAAAAGCucgCUUGAUuuccau 2731 AAC::AG: G C AAGG:::GCU:A:C :G: C GA A:C: G:G :AG: AA G:CA AAGC:::CUUGA:U:C: : gi_545778205_gb_U000 3424511 AACGGAGGAGCACGAAGGUUGGCUAAUCCUGGUCGGACAUCAGGAGGUUAGUGCAAUGGCAUAAGCCAGCUUGACUGCGAG 3424431 ***************************************************************************** PP v v v NC <<_______>>>>>>>>>,<<<____>>>,]],,,,,,,,,,<<<<<<--<<<<_______>>>>>>>>>>,,,,,,,... CS RF02543 2732 ucUCAGUAugaauggaaAccgcGAAAgcgUGGCCUAUCGAUCCUuuaguucuucaaAaUUUgaagcuagAGGUGUCAG... 2809 ::U A ::: :G:A: :GCGAAAGC: G C UA GAUCC U:GU :::+AA :::GC:A G U G gi_545778205_gb_U000 3424430 CGUGA-CGGCGCGAGCAGGUGCGAAAGCAGGUCAUAGUGAUCCGGUGGU--UCUGAAUGGAAGGGCCAUCGCUCAACGgau 3424353 998.5679************************************5..677888888888999999998876544222 PP NC ,,}}}}}--}}}}}},,,,,,,,<<<-<<<<<<<<---<<_______>>--->>>>>>>-->>>>,,,,,,,,,,(((((( CS RF02543 2810 AAAAGUUACCAcAGGGAUAACUGGcuUGUGGCgGCCAAGCGUUCAUAGCGACGUcGCUUUUUgaUCCUUCGAUGUCGGCUC 2890 AAAAG UAC: C:GGGAUAAC G::U : ::CG CCAAG:GUUCAUA:CGACG CG:: UU:G:: C UCGAUGUCGGCUC gi_545778205_gb_U000 3424352 AAAAGGUACUCCGGGGAUAACAGGCUGAUACCGCCCAAGAGUUCAUAUCGACGGCGGUGUUUGGCACCUCGAUGUCGGCUC 3424272 67*************************************************************************** PP vv vv NC (((((,,<<-<<<<<<______>>>>>>--->>,<<<<<_____>>>>>,,,,,)))))--)--))))-),,,,,<<<<<< CS RF02543 2891 UUCCUAUCaUuguGAaGCAGAAuUCacaAAGuGUuGGaUUGUUCAcCCaCuAAUAGGGAACGUGAGCUGGGUUUAGACCGU 2971 UC :AUC:U:G: : G AG A : :C:AAG:GU ::UGUUC:: +UAA : GG ACG GAGCUGGGUUUA:A CGU gi_545778205_gb_U000 3424271 AUCACAUCCUGGGGCUGAAGUAGGUCCCAAGGGUGAUGCUGUUCGCCAUUUAAAGUGGUACGCGAGCUGGGUUUAGAACGU 3424191 ***************************************************************************** PP v NC <____>>>->>>>,,,,}}--}}}}}}}}}}},.,,((((((((--((((,<<<<<<<<_______________>>>>>>> CS RF02543 2972 CGUGAGACAGGUUAGUUUUACCCUaCUgaugga.augucguugcaAcaGcAauccagccuAGUACGAGAGGAACggcuggu 3051 CGUGAGACAG U: GU :: :C::C:G :GG UG::G::::+A::G: : ::CCUAGUACGAGAGGA CGG:: : gi_545778205_gb_U000 3424190 CGUGAGACAGUUCGGUCCCUAUCUGCCGUGGGCgCUGGAGAACUGAGGGGGGCUGCUCCUAGUACGAGAGGACCGGAGUGG 3424110 *****************************98999999999********************************* PP v v v NC ><<<<<---<<<----<<<<<<<<<<<.____.>>>>>>-->>>>>--->>>-->>>>>,..<<<----<<<<<_______ CS RF02543 3052 ucggAuAaUUggUuuucGcggcuGgcu.GAaa.agcCagUGccgCgAAGcuAcCaUccgu..uggAUuAuggCUGAAcGCC 3128 CG:AU A UGGU U :::GG UG:C: G A :G:CA UGCC::: AGCUA AU:CG :GAU+A::GCUGAA GC gi_545778205_gb_U000 3424109 ACGCAUCACUGGUGU-UCGGGUUGUCAuGCCAaUGGCACUGCCCGGUAGCUA-AAUGCGGaaGAGAUAAGUGCUGAAAGCA 3424031 ***********.8888888877637777457788888888899*.**93345579************ PP v v v vv NC ____>>>>>---->>>,))))--..--.)))))))),,,,,,<<<<<<<_~~~~~~~>>>>>>>,,,(((((<<<<<____ CS RF02543 3129 UCUAAGccaGAAuccaugCugga..Aa.gcaacgacuuuuuccccccccu[112]gggggggguugaAucccccGuAGA 3311 UCUAAGC::GAA C: :C::GA ::::C::C C ::CCC:U :GGG:: +: : C:: G AGA gi_545778205_gb_U000 3424030 UCUAAGCACGAAACUUGCCCCGAgaU-gAGUUCUCC-----CUGACCCUU[ 2]AGGGUCCUGAAGGAACGUUGAAGA 3423961 ********************9744.599999999.....344444443....4..444444556666667***** PP v vv v v vv v NC ___>>>>>,,,,<<<<<<<<<-<<--<--<<<<-<<<<<<<<______>>>>>>>>>>>>>--->>---->>>->>>>>>, CS RF02543 3312 CGACggggaUauccgaccgGGUgcUGuAAgcgguacaGcagccUuuuUgcugCgguccgcuGAGgcUuAgCCcuggucgga 3392 CGAC ::G+U + ::: :GG :UGUAA:CG: +U :CG:UGAG: A CC: :::++ gi_545778205_gb_U000 3423960 CGACGACGUUGA-UAGGCCGGGUGUGUAAGCGCA---------GCGAU--------GCGUUGAGCU--AACCGGUACUAAU 3423900 ******65.56666777779****95.........45666........9***75..6699999999999 PP vv v NC ,,))))):: CS RF02543 3393 uagaUucgu 3401 A : :G gi_545778205_gb_U000 3423899 GAACCGUGA 3423891 9999*** PP
RNAfold
>gi_545778205_gb_U000_129 UGCCGAACUUUAACCUAAAAAGUGGUGCUGAUACCCAGAGUCGAACUGGG GACCUCACCCUUACCAAGGGUGCGCUCUACCAACUGAGCCAUAUCAGCAC GCUAAAUUUGAUGCCUGGCAGUUCCCUACUCUCGCAUGGGGAGACCCCAC ACUACCAUCGGCGCUACGGCGUUUCACUUCUGAGUUCGGCAUGGGGUCAG GUGGGACCACCGCGCUACGGCCGCCAGGCAAAUUCUGUUUUAUCAGACCG CUUCUGCGUUCUGAUUUAAUCUGUAUCAGGCUGAAAAUCUUCUCUCAUCC GCCAAAACAGCUUCGGCGUUGUAAGGUUAAGCCUCACGGUUCAUUAGUAC CGGUUAGCUCAACGCAUCGCUGCGCUUACACACCCGGCCUAUCAACGUCG UCGUCUUCAACGUUCCUUCAGGACCCUUAAAGGGUCAGGGAGAACUCAUC UCGGGGCAAGUUUCGUGCUUAGAUGCUUUCAGCACUUAUCUCUUCCGCAU UUAGCUACCGGGCAGUGCCAUUGGCAUGACAACCCGAACACCAGUGAUGC GUCCACUCCGGUCCUCUCGUACUAGGAGCAGCCCCCCUCAGUUCUCCAGC GCCCACGGCAGAUAGGGACCGAACUGUCUCACGACGUUCUAAACCCAGCU CGCGUACCACUUUAAAUGGCGAACAGCAUCACCCUUGGGACCUACUUCAG CCCCAGGAUGUGAUGAGCCGACAUCGAGGUGCCAAACACCGCCGUCGAUA UGAACUCUUGGGCGGUAUCAGCCUGUUAUCCCCGGAGUACCUUUUAUCCG UUGAGCGAUGGCCCUUCCAUUCAGAACCACCGGAUCACUAUGACCUGCUU UCGCACCUGCUCGCGCCGUCACGCUCGCAGUCAAGCUGGCUUAUGCCAUU GCACUAACCUCCUGAUGUCCGACCAGGAUUAGCCAACCUUCGUGCUCCUC CGUUACUCUUUAGGAGGAGACCGCCCCAGUCAAACUACCCACCAGACACU GUCCGCAACCCGGAUUACGGGUCAACGUUAGAACAUCAAACAUUAAAGGG UGGUAUUUCAAGGUCGGCUCCAUGCAGACUGGCGUCCACACUUCUAAGCC UCCCACCUAUCCUACACAUCAAGGCUCAAUGUUCAGUGUCAAGCUAUAGU AAAGGUUCACGGGGUCUUUCCGUCUUGCCGCGGGUACACUGCAUCUUCAC AGCGAGUUCAAUUUCACUGAGUCUCGGGUGGAGACAGCCUGGCCAUCAUU ACGCCAUUCGUGCAGGUCGGAACUUACCCGACAAGGAAUUUCGCUACCUU AGGACCGUUAUAGUUACGGCCGCCGUUUACCGGGGCUUCGAUCAAGAGCU UCGCUUGCGCUAACCCCAUCAAUUAACCUUCCGGCACCGGGCAGGCGUCA CACCGUAUACGUCCACUUUCGUGUUUGCACAGUGCUGUGUUUUUAAUAAA CAGUUGCAGCCAGCUGGUAUCUUCGACUGAUUUCAGCUCCACGAGCAAGU CGCUUCACCUACAUAUCAGCGUGCCUUCUCCCGAAGUUACGGCACCAUUU UGCCUAGUUCCUUCACCCGAGUUCUCUCAAGCGCCUUGGUAUUCUCUACC UGACCACCUGUGUCGGUUUGGGGUACGAUUUGAUGUUACCUGAUGCUUAG AGGCUUUUCCUGGAAGCAGGGCAUUUGUUGCUUCAGCACCGUAGUGCCUC GUCAUCACGCCUCAGCCUUGAUUUUCCGGAUUUGCCUGGAAAACCAGCCU ACACGCUUAAACCGGGACAACCGUCGCCCGGCCAACAUAGCCUUCUCCGU CCCCCCUUCGCAGUAACACCAAGUACAGGAAUAUUAACCUGUUUCCCAUC GACUACGCCUUUCGGCCUCGCCUUAGGGGUCGACUCACCCUGCCCCGAUU AACGUUGGACAGGAACCCUUGGUCUUCCGGCGAGCGGGCUUUUCACCCGC UUUAUCGUUACUUAUGUCAGCAUUCGCACUUCUGAUACCUCCAGCAUGCC UCACAGCACACCUUCGCAGGCUUACAGAACGCUCCCCUACCCAACAACGC AUAAGCGUCGCUGCCGCAGCUUCGGUGCAUGGUUUAGCCCCGUUACAUCU UCCGCGCAGGCCGACUCGACCAGUGAGCUAUUACGCUUUCUUUAAAUGAU GGCUGCUUCUAAGCCAACAUCCUGGCUGUCUGGGCCUUCCCACAUCGUUU CCCACUUAACCAUGACUUUGGGACCUUAGCUGGCGGUCUGGGUUGUUUCC CUCUUCACGACGGACGUUAGCACCCGCCGUGUGUCUCCCGUGAUAACAUU CUCCGGUAUUCGCAGUUUGCAUCGGGUUGGUAAGUCGGGAUGACCCCCUU GCCGAAACAGUGCUCUACCCCCGGAGAUGAAUUCACGAGGCGCUACCUAA AUAGCUUUCGGGGAGAACCAGCUAUCUCCCGGUUUGAUUGGCCUUUCACC CCCAGCCACAAGUCAUCCGCUAAUUUUUCAACAUUAGUCGGUUCGGUCCU CCAGUUAGUGUUACCCAACCUUCAACCUGCCCAUGGCUAGAUCACCGGGU UUCGGGUCUAUACCCUGCAACUUAACGCCCAGUUAAGACUCGGUUUCCCU UCGGCUCCCCUAUUCGGUUAACCUUGCUACAGAAUAUAAGUCGCUGACCC AUUAUACAAAAGGUACGCAGUCACACGCCUAAGCGUGCUCCCACUGCUUG UACGUACACGGUUUCAGGUUCUUUUUCACUCCCCUCGCCGGGGUUCUUUU CGCCUUUCCCUCACGGUACUGGUUCACUAUCGGUCAGUCAGGAGUAUUUA GCCUUGGAGGAUGGUCCCCCCAUAUUCAGACAGGAUACCACGUGUCCCGC CCUACUCAUCGAGCUCACAGCAUGUGCAUUUUUGUGUACGGGGCUGUCAC CCUGUAUCGCGCGCCUUUCCAGACGCUUCCACUAACACACACACUGAUUC AGGCUCUGGGCUGCUCCCCGUUCGCUCGCCGCUACUGGGGGAAUCUCGGU UGAUUUCUUUUCCUCGGGGUACUUAGAUGUUUCAGUUCCCCCGGUUCGCC UCAUUAACCUAUGGAUUCAGUUAAUGAUAGUGUGUCGAAACACACUGGGU UUCCCCAUUCGGAAAUCGCCGGUUAUAACGGUUCAUAUCACCUUACCGAC GCUUAUCGCAGAUUAGCACGUCCUUCAUCGCCUCUGACUGCCAGGGCAUC CACCGUGUACGCUUAGUCGCUUAACCUCACAACCCGAAGAUGUUUCACUU CAGAGUUGCGAAAAUUUGAGAGACUCACGAACAACUUUCGUUGUUCAGUG UUUCAAUUUUCAGCUUGAUCCAGAUUUUUAAAGAGCAAAACUUCGCAGUG AACCUUUGCAGGUACACUCUGAAGUAUUUUUUAUUUAAUCACUACAGAGA U 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(-1055.10)
Length sequence : 3401	Length match: 2732