Alignments: NC
:::::::::::::::::::::::<<<<<<-----<<____>>------>>>>>->,,,,,,,,,<<____>>,,,<<<<<- CS
RF02543 1 ugacCUuaaaUcAgguaaGAuUAcCcgCuGAAuUUAAGCAUAUuAaUAaGcgGAgGAAAAGAAAcuAACaagGAUUcccuu 81
+ CC UA+ U+A A+G ACC:G :GAA+U AA CAU U A UA: C:GAGGAAAAGAAA::AAC ::GAUUCCC:
gi_545778205_gb_U000 4037678 AAUCCAUAGGUUAAUGAGGCGAACCGGGGGAACUGAAACAUCUAAGUACCCCGAGGAAAAGAAAUCAACCGAGAUUCCCCC 4037758
********************************************************************************* PP
v NC
----<<_____>>---->>>>>,,[[[[,,.<<<<<<<<<<<<<<<<_______>>>>>>>>>>>>>>>>,,,,((((((- CS
RF02543 82 AGUAgcGGCGAgcGAAgagggAAuAGCcCA.cgcugcaacuccgcccucuuuuugggcggaguugcagcgUauaggggccu 161
AGUAGCGGCGAGCGAA :GGGA AGCCCA + G: :C:
gi_545778205_gb_U000 4037759 AGUAGCGGCGAGCGAACGGGGAGCAGCCCAg----------------------A----------------GCCUGAAUCA- 4037800
******************************2......................2................4444664443. PP
v v v v NC
((((-(((((((-(((((((,,,<-<<<<______>>>>>,,<___>,,<<_______>>,,,,,)))))))--))))))) CS
RF02543 162 ccucagccgcggcccccgccuAAgUccccUgGAAuggggcaccAuAgAGGGUGAgAguCCcGUauggcgggguaccgcggc 242
G: :::G : :: :: A: C::CUGGAA G::G: C:AUA:AGGGUGA AG CCCGUA :: :: :U C::: :C
gi_545778205_gb_U000 4037801 -----GUGUGUG-UGUUAGUGGAAGCGUCUGGAAAGGCGUGCGAUACAGGGUGACAGCCCCGUACACAAAAAUGCACAUGC 4037875
.....5555555.5567788999*****************************************99987777665555555 PP
v NC
-----))))))))-)),,,,,,,,<<<<<<<___..._____>>>>>>>,,,,.,<<<<<________>>>>>,,]]]],, CS
RF02543 243 uuuaugaggggccuccaaaGAGUCGgGuugcUUG...ggAaUgcagCcCaAAg.UgGguGGUAaAuUuCauCcAAgGCUAA 319
U :G: :C A+GAGU :G : G: GG AU:C : C: AA+ UGGG:GG A + UC:UCCAAGGCUAA
gi_545778205_gb_U000 4037876 UG-------UGAGCUCGAUGAGUAGGGCGGGACAcguGGUAUCCUGUCUGAAUaUGGGGGG--ACCAUCCUCCAAGGCUAA 4037947
54.......3444577889999999999988643111345678999999999845666665..45667999999******* PP
NC
,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,<<____>>,,,,,,,,,,,,,,,<<<<__.__>>>>,,,,,,,,,,,,,, CS
RF02543 320 AUAuuagcaaGAGACCGAUAGcgaACAAGUAccGUGAggGAAAGaUGAAAAGaACucuGA.AaagaGAGUUAAAuAGuAcg 399
AUA+U + A GACCGAUAG+GAAC AGUACCGUGAGGGAAAG GAAAAGAAC:C:G A:G:GAGU AAA AG AC
gi_545778205_gb_U000 4037948 AUACUCCUGACUGACCGAUAGUGAACCAGUACCGUGAGGGAAAGGCGAAAAGAACCCCGGcGAGGGGAGUGAAAAAGAACC 4038028
**********************************************************87368999*************** PP
v v v NC
,,,,,,,,,,,,,,,,,,,,(~~~~~~~),,<<<<________>>>>{{{{{{,,,,(((((((((((((,,<<<--<<<< CS
RF02543 400 UGAAAuuGuUaAgAgGgAAgc*[225]*gACCCGUCUUGAAACACGGACCAAGGAGUccaacauguguGCgAGuguuuggg 698
UGAAA++GU +A AAGC G CC U UUG A A GG::CA: GA U:::A::::: ::C+AG U+ ::
gi_545778205_gb_U000 4038029 UGAAACCGUGUACGUACAAGC*[ 29]*GUACCUU-UUGUAUAAUGGGUCAGCGACUUAUAUUCUGUAGCAAGGUUAACC- 4038129
*********999999888876....6..4556644.788888899******************************99765. PP
v v v NC
<<____>>>>>>-->>>,,,<<____>>,,,,,,,~~~~~~~~~~~~,,,,))))))))))))),,[[-[---[[[[[[,, CS
RF02543 699 ucauuAgacccauacgCGuAacgAAagugAauuaa*[29]**[33]*aaGAGCacacauguuggGACCCGAAAGauGGUGA 829
A UA :: A CG A::GAAA::GA U ++ AG:: :::::U:::GACCCGAAA:::GGUGA
gi_545778205_gb_U000 4038130 -GAAUA---GGGGAGCCGAAGGGAAACCGAGU---*[ 8]**[ 4]*UUAAGUUGCAGGGUAUAGACCCGAAACCCGGUGA 4038203
.33444...66799***************974......8.....*..9********************************* PP
v v v v NC
,((((((((((((,<<<<---<<<<<<<____>>>>>>>---->>>>,,,<<<<-<<-<<________>>>>>>>>,,)-) CS
RF02543 830 ACUAugCcugggcAGggcGAAGccAGgGGAAACcCUggUGGAGgccCGuAgcgaUuCUGACGUGCAAAUCGaucgucagAc 910
C A::C:UG GCAGG::GAAG::: G AA C :::UGGAG::CCG+A:CG U: : UG AAA ::A CG: +GAC
gi_545778205_gb_U000 4038204 UCUAGCCAUGGGCAGGUUGAAGGUUGGGUAACACUAACUGGAGGACCGAACCGACUA-AUGUUGAAAAAUUAGCGGAUGAC 4038283
*******************************99********************9887.777788898888899******** PP
NC
)))))))))),<<<_____>>>,,,,,,]]]]]]------]-]],,[[[[[[,,,,<<<<<____>>>>>,,(((((((,, CS
RF02543 911 cuggGuaUAGGgGcGAAAGaCuAAUCGAACCauCUAGUAGCUGGUUcCcuCCGAAGuuUCCCUCAGGAuaGCuggagcuuu 991
UG:G::U GG:G GAAAG C:AAUC AACC::: UAGCUGGUUC:C:CCGAA ::U:: U ::A::GC: ::::: U
gi_545778205_gb_U000 4038284 UUGUGGCUGGGGGUGAAAGGCCAAUCAAACCGGGAGAUAGCUGGUUCUCCCCGAAAGCUAUUUAGGUAGCGCCUCGUGAAU 4038364
*************************************************************************99999933 PP
v v vv v v v v vv v v NC
,,,,,,,<<<<<<<<----<<<----<<<<<<<<<<--<<<<<<-<_____>->>>>>>.>>>>>>>>>>-->>->----> CS
RF02543 992 uuuuuAGUcuuAuccGGUAAAGCgAAUGAuUAgaGGcuucggGgacgaAAugucCucga.CCuaUUcUCAAACUUUAAAUg 1071
U +A UCU:::: GGUA:AGC A UG :::: C+ : G:G+C + +G+C:U : +C:::: CAAACU : AAU
gi_545778205_gb_U000 4038365 U---CA-UCUCCGGGGGUAGAGC-ACUGUUUCGG--CAAGGGGGUCAUCCCGACUUACCaACCCGAUGCAAACUGCGAAUA 4038438
2...22.***************8.78*9887776..889999999***99**99995543567777889************ PP
NC
>>>>>>>,<<<<<<<<<_________>>>>>>>>>,,,,,,,,,,,))))))),,,,,<<<<<<<<<<_.____>>>>>>> CS
RF02543 1072 ggUaagAagccccgguuaCUUaauUGaaccggggcauuuaAuauaaagcuccaAGUGGGCCAcUUuUGG.UAAGCAgAAgU 1151
::::AGAA UG U A::::: :AG C: :: G UAA :: :
gi_545778205_gb_U000 4038439 CCGGAGAA----------------UG-----------------UUAUCACGGGAGACACACGGCGGGUGcUAACGUCCGUC 4038486
*******6................22.................33399999999987766666666665599966666666 PP
v vv NC
>>>,,,,<<<______>>>,,,(((.((-(---(((------(-(--(((------------------(((-((((((((( CS
RF02543 1152 GGCGAUGcGGGAUGAACCgAAcGcc.ggGuUAAGGuGCcuaAgUgcacgCUcAUcuAGAuaCCAuAAAaGGUGUuggUuca 1231
G A :GG A AACC:A C: ::G:UAAGGU CC+AAGU:++:G:U A G AAA:G UGU GG :
gi_545778205_gb_U000 4038487 GUGAAGAGGGAAACAACCCAGACCGcCAGCUAAGGUCCCAAAGUCAUGGUUAAGUGGG-------AAACGAUGUGGGAAGG 4038560
6666666777778899****99999459**********************99997666.......799************* PP
vv v NC
(-------(((((,<<<--<<<_________>>>-->>><___><---<<______>>->,)))))---)))))))))))) CS
RF02543 1232 UauaGACAGCaGgAcGGUGgccAUGGAAGUCggaAUCCgCUAAGGAGUGUGUAACAACUCAcCuGCCGAAugaAccaGCCC 1312
: AGACA C::G ::GU ::C U GAAG G::AUC:::UAA:GA G:GUAA A:CUCAC::G CGA: : CC GC C
gi_545778205_gb_U000 4038561 CCCAGACAGCCAGGAUGUUGGCUUAGAAGCAGCCAUCAUUUAAAGAAAGCGUAAUAGCUCACUGGUCGAGUCGGCCUGCGC 4038641
********************************************************************************* PP
NC
)-------------------)))--)))))---)-)))))<<<<<<<<<_________>>>>>>>>>,,,,]]]]]]<-<< CS
RF02543 1313 uGAAAAUGGAUGGCGCUuAAGcguaccaCCuAUaCccggCCgucggggcAaauuuaaugccccgacGAGUAGGagGgcGug 1393
:GAA AUG A G G UAA:C:++:CACC A :C:::G C: C::::C AUG::::G :G GUAGG:G:GCGU:
gi_545778205_gb_U000 4038642 GGAAGAUGUAACGGGGCUAAACCAUGCACCGAAGCUGCGGCAGCGACACU------AUGUGUUGUUGGGUAGGGGAGCGUU 4038716
********9887777777999****************************4......56*********************** PP
vv vv NC
<<<<<<.<<------<<----<<<____>>>--->>--->>>>>>>>>>-->,,,,,}}}}}},,,,,,,,,,,,,,<<<< CS
RF02543 1394 gcGgcu.gcguuGAAgcuuugggcGUgAgccuggguGGAgcagcCgccaGUgCAGAUCUUGGUGGUAGUAGCAAAUAcUCa 1473
::G : :C UGAAG:U U G: GUGA :C G:UGGAG:: C:::AGUGC AU :UG:: AGUA C A A::C:
gi_545778205_gb_U000 4038717 CUGUAAgCCUGUGAAGGUGU-GCUGUGAGGCAUGCUGGAGGUAUCAGAAGUGCGAAUGCUGACAUAAGUAACGAUAAAGCG 4038796
******99999999999766.************************************************************ PP
NC
<<_______>>>>>>{{{{,,,,,{{{{,,{{,,,<<<<<<---<<_____>>->>>>>>,,,,,,{{{,((.---(( CS
RF02543 1474 AaUGAGAaCuUuGAggACuGAAGUGGaGAAGGGUUcCgugugAACaGuAgUuGaacacGgGUuAGUCGgUCC.UAAGg 1550
::UGA AA :::G::::C:G A G:::AAGGGUUCC:: : AAC: UA+U:G+: ::GGGU AGUCG: CC UAA
gi_545778205_gb_U000 4038797 GGUGAAAAGCCCGCUCGCCGGA-AGACCAAGGGUUCCUGUCCAACGUUAAUCGGGGCAGGGUGAGUCGACCCcUAA-- 4038871
********************98.5*********************************************8763666.. PP
v NC
~~~~~~~~~~~~,,,,,))----)),,,<<<<<________>>>>>,,[[[[-[[[[[[[,,,,<<<<____>>>>,,,,, CS
RF02543 1551 *[17]**[21]*auuuacCGAAAGGGAAgcgGGUUAAuAUUCCcgcACcuggacguggauuuuaugcgGuAAcgcaAaugA 1657
GGGAA:C:GGUUAAUAUUCC:G:AC:UG GU:::U A
gi_545778205_gb_U000 4038872 *[11]**[13]*----------UGGGAAACAGGUUAAUAUUCCUGUACUUGGU-GUUACUGCG--------A--------- 4038936
...6.....6............3***************************994.776655433........2......... PP
v v vvv v v v v NC
,((((((---((((-(((((((-(((<<<<<<._________>>>>>>,,,<<<<<-----<<<<<<<<<<<<<_____>> CS
RF02543 1658 acucggaGAcgccggcgggggccccgggaaGa.GUUuUCUUUuCuucuUAAcggccuauuuaCCcugcAaccgguUuaucc 1737
::G:GACG :G :GG :: ::GG:::G: G U U:C:::UU A: : ++ :: : ::: C GG AUCC
gi_545778205_gb_U000 4038937 -AGGGGGGACGGAGAAGGCUAUGUUGGCCGGGcGACGGUUGUCCCGGUUUAAGCGUGUAGGCUGGUUUUCCAGGCAAAUCC 4039016
.357899***********************997777788889999999887655554444477677777777899999999 PP
v v v v vvv vv vv v v NC
>>>>>>>>>>>----->>>>>,,,,,,<<<<<<<_____>>>>>>>,,)))---)))))))-))))---------)))))) CS
RF02543 1738 ggaGguagGGuuuaauggccgGaAgAGcgccgcauuuuuugcggcgUCcggUgugcccccgacggcCCUUGAAAAuccgag 1818
G ::: : :: + : :GA GA ::::U :::: C:: + :: CC: C: CC AAA :C::
gi_545778205_gb_U000 4039017 GGAAAAUCAAGGCUGAGGCGUGAUGACGAGGCACUACG-GUGCUGAAGCAACAAAUGCCCUGCUUCCAGGAAAAGCCUCUA 4039096
77777766655555555555688888888899999888.9999999******************99888777777776543 PP
v NC
,,,,,,,,,,,]]-]]]]]]]]],}}},,}},,,,,<<______>>,}}}},<<<<_____>>>>,,}}}},,{{{{---- CS
RF02543 1819 GgAaggaauaaauuccacgccaggcCGUACCcAUAaCCGCAuCAGGUCuCCAAGGugAauAgCCUCUaGUcgAUAGAAuAA 1899
A+ + A: ::AC+ CA:+:CGUACCC AACCG CAGGU:::CA:G :GA +A: C: :G:: U:::A AA
gi_545778205_gb_U000 4039097 --AGCAUC---AGGUAACAUCAAAUCGUACCCCAAACCGACACAGGUGGUCAGGUAGAGAAUACCAAGGCGCUUGAGAGAA 4039172
..333333...4456777899************************************************************ PP
NC
{{{{{{{{-{{{,,,,,,,,,,,,,,<<<<<---<<____>>---->>>>><<<<<<<<<~~~~~~~-->>>>>>>>><__ CS
RF02543 1900 gGUAGgUAAGGGAAGUCGGCAAAaUAGAUCCGUAaCUUcGGgAaAAGGAUUGGCUCUgAg*[146]*AAcUcAGAACUGGu 2119
: ::GGU:A:GGAA U GGCAAAAU :: CCGUAACUUCGGGA AAGG ::G CUGA: AA:UCAG U:G+
gi_545778205_gb_U000 4039173 CUCGGGUGAAGGAACUAGGCAAAAUGGUGCCGUAACUUCGGGAGAAGGCACG---CUGAU*[ 31]*AAAUCAG---UCGA 4039271
***************************************************9...66776....9..5667766...9*** PP
v v v v NC
_>,,,,,,,[[[[[[[[[,,<<<_________>>>,,<<<<<<<<-<-<<<<_____>>>>->--->>>>>>>>,,((((, CS
RF02543 2120 ACGGACaAGgGGAAUCcGACUGUuUAAUUAAAACAuAGcAUugcGAcGgcccgaAaggggcGgUGACgcaAUgUGAuUuCU 2200
A: AC AG: G: C:ACUGUUUA U AAAACA AGCA: G:: + C:CGAAA G:G A::C :UGUGA: :CU
gi_545778205_gb_U000 4039272 AGAUACCAGCUGGCUGCAACUGUUUAUUAAAAACACAGCACUGUGCAAACACGAAA-GUGGACGUAUACGGUGUGACGCCU 4039351
********************************************************.************************ PP
NC
<<<--<<<<<<-<--<<<----~~~~~~--->>>>>>>>-->>>>><<<<<<_______>>>>>><___>,,,,,,,,,,, CS
RF02543 2201 GCCCAGUGCUcUGAAuGuCAAa*[15]*cAAgCgCgGGUAAACGGCGGGAGUAACUAUGACUCUCuUAAgGUAGCCAAAUG 2290
GCCC GUGC:: GAA:GU AA AAGC:C::GUAAACGGCGG GUAACUAU AC UC:UAA:GUAGC AAAU
gi_545778205_gb_U000 4039352 GCCCGGUGCCG-GAAGGUUAAU*[34]*GAAGCCCCGGUAAACGGCGGCCGUAACUAUAACGGUCCUAAGGUAGCGAAAUU 4039459
***********.********98...9..689************************************************** PP
NC
,,,,<<<<<<_____>>>>>>,,,,,,,,,,)))),,,]]-]]]]]]],,,,}}}-}}}}}}}}-}}}},,,,,,,,,,,. CS
RF02543 2291 CCUCGUCAucUAAUUagUGACGCGCAUGAAUGgAuUAACgAGAUUCCcACUGUCCCUAcCUACcAUCUAGCGAAACCACA. 2370
CCU GUC:: UAA U ::GAC GCA GAAUG: :UAA:GA :C : CUGUC:C:ACC:: :A:::AG GAAA A
gi_545778205_gb_U000 4039460 CCUUGUCGGGUAAGUUCCGACCUGCACGAAUGGCGUAAUGAUGGCCAGGCUGUCUCCACCCGAGACUCAGUGAAAUUGAAc 4039540
***************************************************************************997773 PP
v NC
,<<<<<________>>>>>,,{{{{{{{{-{{{-{{,,,,,,{{{{-{{{{{{{,[[[[---[[[[[[[,,<<<<<<<<<< CS
RF02543 2371 GcCAAGGGAACGGGCUUGgaAccaucAGcGGGGAAAGAAGACCCUgUUGAGCUUGACUCUAGucuGgcaUUGugaagcgac 2451
C G GAA GC G+ACC: C:G: :G: :: AAGACCC:GU :A CUU ACU UAG:: G:CA UG:::A:::A
gi_545778205_gb_U000 4039541 UCGCUGUGAAGAUGCAGUGUACCCGCGGCAAGACGGAAAGACCCCGUGAACCUUUACUAUAGCUUGACACUGAACAUUGAG 4039621
5******************************************************************************** PP
v v v NC
<<<<<<<<---------<<<<<--<<______.........................>>------------>>>>>>>>>> CS
RF02543 2452 auggggGgUGUAGaAUAaGUGGGAGcuuuuag.........................gCGccagUGAAAUACCACuaCccc 2507
: :::: :UGUAG AUA:GUGGGAG:+UUU++ :CG+C UGAAAUACCAC:: :::
gi_545778205_gb_U000 4039622 CCUUGAUGUGUAGGAUAGGUGGGAGGCUUUGAaguguggacgccagucugcauggagCCGACCUUGAAAUACCACCCUUUA 4039702
*****************************997************************************************* PP
v v v v NC
>>>->>>>>>>>>>,,,((((~~~~~~)))),,,,,]]]]]]]----]]]],,<<<<_____>>>-><<<<<<________ CS
RF02543 2508 cauugucgcuucaCUUAcucc*[68]*ggagGACAuugcCaggUGGGGAGUUUGgCuGGGGCgGcACAuCuGuuAAAuaAU 2650
: : U:::U:::CU AC:: ::GGACA UG:C ::UGGG AGUUUG:CUGGGGCGG: C :CU::UAAA A U
gi_545778205_gb_U000 4039703 AUG-UUUGAUGUUCUAACGUU*[16]*UGCGGACAGUGUCUGGUGGGUAGUUUGACUGGGGCGGU-CUCCUCCUAAAGAGU 4039791
***.89************975...7..589***********************************.*************** PP
v NC
___>>>>>>,,[[,,,,((((((<<-<<<<<<_______>>>>>>--->><<______>>,,,,)))))),,,,<<<<<<< CS
RF02543 2651 AACgCaGgUGUCCUAAGGcgaGCUCAgcGaGgACAGAAAcCuCgcGUaGAgcAAAAGGgcAAAAGCucgCUUGAUuuccau 2731
AAC::AG: G C AAGG:::GCU:A:C :G: C GA A:C: G:G :AG: AA G:CA AAGC:::CUUGA:U:C: :
gi_545778205_gb_U000 4039792 AACGGAGGAGCACGAAGGUUGGCUAAUCCUGGUCGGACAUCAGGAGGUUAGUGCAAUGGCAUAAGCCAGCUUGACUGCGAG 4039872
********************************************************************************* PP
v v v NC
<<_______>>>>>>>>>,<<<____>>>,]],,,,,,,,,,<<<<<<--<<<<_______>>>>>>>>>>,,,,,,,... CS
RF02543 2732 ucUCAGUAugaauggaaAccgcGAAAgcgUGGCCUAUCGAUCCUuuaguucuucaaAaUUUgaagcuagAGGUGUCAG... 2809
::U A ::: :G:A: :GCGAAAGC: G C UA GAUCC U:GU :::+AA :::GC:A G U G
gi_545778205_gb_U000 4039873 CGUGA-CGGCGCGAGCAGGUGCGAAAGCAGGUCAUAGUGAUCCGGUGGU--UCUGAAUGGAAGGGCCAUCGCUCAACGgau 4039950
**998.5679**************************************5..677888888888999999998876544222 PP
NC
,,}}}}}--}}}}}},,,,,,,,<<<-<<<<<<<<---<<_______>>--->>>>>>>-->>>>,,,,,,,,,,(((((( CS
RF02543 2810 AAAAGUUACCAcAGGGAUAACUGGcuUGUGGCgGCCAAGCGUUCAUAGCGACGUcGCUUUUUgaUCCUUCGAUGUCGGCUC 2890
AAAAG UAC: C:GGGAUAAC G::U : ::CG CCAAG:GUUCAUA:CGACG CG:: UU:G:: C UCGAUGUCGGCUC
gi_545778205_gb_U000 4039951 AAAAGGUACUCCGGGGAUAACAGGCUGAUACCGCCCAAGAGUUCAUAUCGACGGCGGUGUUUGGCACCUCGAUGUCGGCUC 4040031
67******************************************************************************* PP
NC
(((((,,<<-<<<<<<______>>>>>>--->>,<<<<<_____>>>>>,,,,,)))))--)--))))-),,,,,<<<<<< CS
RF02543 2891 UUCCUAUCaUuguGAaGCAGAAuUCacaAAGuGUuGGaUUGUUCAcCCaCuAAUAGGGAACGUGAGCUGGGUUUAGACCGU 2971
UC :AUC:U:G: : G AG A : :C:AAG:GU::G::UGUUC::C::+UAA : GG ACG GAGCUGGGUUUA:A CGU
gi_545778205_gb_U000 4040032 AUCACAUCCUGGGGCUGAAGUAGGUCCCAAGGGUAUGGCUGUUCGCCAUUUAAAGUGGUACGCGAGCUGGGUUUAGAACGU 4040112
********************************************************************************* PP
v NC
<____>>>->>>>,,,,}}--}}}}}}}}}}},.,,((((((((--((((,<<<<<<<<_______________>>>>>>> CS
RF02543 2972 CGUGAGACAGGUUAGUUUUACCCUaCUgaugga.augucguugcaAcaGcAauccagccuAGUACGAGAGGAACggcuggu 3051
CGUGAGACAG U: GU :: :C::C:G :GG UG::G::::+A::G: : ::CCUAGUACGAGAGGA CGG:: :
gi_545778205_gb_U000 4040113 CGUGAGACAGUUCGGUCCCUAUCUGCCGUGGGCgCUGGAGAACUGAGGGGGGCUGCUCCUAGUACGAGAGGACCGGAGUGG 4040193
*********************************9899999999************************************** PP
v v v NC
><<<<<---<<<----<<<<<<<<<<<.____.>>>>>>-->>>>>--->>>-->>>>>,..<<<----<<<<<_______ CS
RF02543 3052 ucggAuAaUUggUuuucGcggcuGgcu.GAaa.agcCagUGccgCgAAGcuAcCaUccgu..uggAUuAuggCUGAAcGCC 3128
CG:AU A UGGU U :::GG UG:C: G A :G:CA UGCC::: AGCUA AU:CG :GAU+A::GCUGAA GC
gi_545778205_gb_U000 4040194 ACGCAUCACUGGUGU-UCGGGUUGUCAuGCCAaUGGCACUGCCCGGUAGCUA-AAUGCGGaaGAGAUAAGUGCUGAAAGCA 4040272
***************.8888888877637777457788888888899*****.******93345579************** PP
v v NC
____>>>>>---->>>,))))--..--.)))))))),,,,,,<<<<<<~~~~~~~>>>>>>,,,(((((<<<<<_______ CS
RF02543 3129 UCUAAGccaGAAuccaugCugga..Aa.gcaacgacuuuuuccccccc*[115]*ggggggguugaAucccccGuAGACGA 3314
UCUAAGC::GAA C: :C::GA ::::C::C U +C:CC:: ::GG: C:: G AGACGA
gi_545778205_gb_U000 4040273 UCUAAGCACGAAACUUGCCCCGAgaU-gAGUUCUCC-CUGACUCCUUG*[ 8]*GAAGGAA-------CGUUGAAGACGA 4040345
**********************9744.599999999.55555555553....5..3555554.......************ PP
vv v v v v vv NC
>>>>>,,,,<<<<<<<<<-<<--<--<<<<-<<<<<<<<______>>>>>>>>>>>>>--->>---->>>->>>>>>,,,) CS
RF02543 3315 CggggaUauccgaccgGGUgcUGuAAgcgguacaGcagccUuuuUgcugCgguccgcuGAGgcUuAgCCcuggucggauag 3395
C ::G+U +::G C GG :UGUAA:CG: +U :CG:UGAG: A CC G C::AU
gi_545778205_gb_U000 4040346 CGACGUUGAUAGGCC-GGGUGUGUAAGCGCA---------GCGAU--------GCGUUGAGCU--AACCG-GUACUAAU-- 4040403
*******87777655.55568********95.........45666........9*******75..55776.55566676.. PP
NC
)))):: CS
RF02543 3396 aUucgu 3401
G
gi_545778205_gb_U000 4040404 ----GA 4040405
....** PP
>> |
