Alignments: NC
:::::::::::::::::::::::<<<<<<-----<<____>>------>>>>>->,,,,,,,,,<<____>>,,,<<<<<- CS
RF02543 1 ugacCUuaaaUcAgguaaGAuUAcCcgCuGAAuUUAAGCAUAUuAaUAaGcgGAgGAAAAGAAAcuAACaagGAUUcccuu 81
+ CC UA+ U+A A+G ACC:G :GAA+U AA CAU U A UA: C:GAGGAAAAGAAA::AAC ::GAUUCCC:
gi_545778205_gb_U000 4168800 AAUCCAUAGGUUAAUGAGGCGAACCGGGGGAACUGAAACAUCUAAGUACCCCGAGGAAAAGAAAUCAACCGAGAUUCCCCC 4168880
********************************************************************************* PP
v NC
----<<_____>>---->>>>>,,[[[[,,.<<<<<<<<<<<<<<<<_______>>>>>>>>>>>>>>>>,,,,((((((- CS
RF02543 82 AGUAgcGGCGAgcGAAgagggAAuAGCcCA.cgcugcaacuccgcccucuuuuugggcggaguugcagcgUauaggggccu 161
AGUAGCGGCGAGCGAA :GGGA AGCCCA + G: :C:
gi_545778205_gb_U000 4168881 AGUAGCGGCGAGCGAACGGGGAGCAGCCCAg----------------------A----------------GCCUGAAUCA- 4168922
******************************2......................2................4444664444. PP
v vvvv vvvv v NC
((((-(((((((-(((((((,,,<-<<<<______>>>>>,,<___>,,<<_______>>,,,,,)))))))--))))))) CS
RF02543 162 ccucagccgcggcccccgccuAAgUccccUgGAAuggggcaccAuAgAGGGUGAgAguCCcGUauggcgggguaccgcggc 242
G: :::G+ :: AAG C::CUGGAA G::GC C:AUA:AGGGUGA AG CCCGUA :: U C::: :C
gi_545778205_gb_U000 4168923 -----GUGUGUGUGUUAGUGGAAG-CGUCUGGAAAGGCGCGCGAUACAGGGUGACAGCCCCGUACACAAAAAUGCACAUGC 4168997
.....4444444233333445666.**************************************986554444444444444 PP
v NC
-----))))))))-)),,,,,,,,<<<<<<<___..._____>>>>>>>,,,,.,<<<<<________>>>>>,,]]]],, CS
RF02543 243 uuuaugaggggccuccaaaGAGUCGgGuugcUUG...ggAaUgcagCcCaAAg.UgGguGGUAaAuUuCauCcAAgGCUAA 319
U :G: :C A+GAGU :G : G: GG AU:C : C: AA+ UGGG:GG A + UC:UCCAAGGCUAA
gi_545778205_gb_U000 4168998 UG-------UGAGCUCGAUGAGUAGGGCGGGACAcguGGUAUCCUGUCUGAAUaUGGGGGG--ACCAUCCUCCAAGGCUAA 4169069
44.......4444577999999999999998643111345678999999999845666665..45667999999******* PP
NC
,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,<<____>>,,,,,,,,,,,,,,,<<<<__.__>>>>,,,,,,,,,,,,,, CS
RF02543 320 AUAuuagcaaGAGACCGAUAGcgaACAAGUAccGUGAggGAAAGaUGAAAAGaACucuGA.AaagaGAGUUAAAuAGuAcg 399
AUA+U + A GACCGAUAG+GAAC AGUACCGUGAGGGAAAG GAAAAGAAC:C:G A:G:GAGU AAA AG AC
gi_545778205_gb_U000 4169070 AUACUCCUGACUGACCGAUAGUGAACCAGUACCGUGAGGGAAAGGCGAAAAGAACCCCGGcGAGGGGAGUGAAAAAGAACC 4169150
**********************************************************87368999*************** PP
v v v NC
,,,,,,,,,,,,,,,,,,,,(~~~~~~~),,<<<<________>>>>{{{{{{,,,,(((((((((((((,,<<<--<<<< CS
RF02543 400 UGAAAuuGuUaAgAgGgAAgc*[225]*gACCCGUCUUGAAACACGGACCAAGGAGUccaacauguguGCgAGuguuuggg 698
UGAAA++GU +A AAGC G CC U UUG A A GG::CA: GA U:::A::::: ::C+AG U+ ::
gi_545778205_gb_U000 4169151 UGAAACCGUGUACGUACAAGC*[ 29]*GUACCUU-UUGUAUAAUGGGUCAGCGACUUAUAUUCUGUAGCAAGGUUAACC- 4169251
*********999999888876....6..4556644.788888899******************************99765. PP
v v v NC
<<____>>>>>>-->>>,,,<<____>>,,,,,,,~~~~~~~~~~~~,,,,))))))))))))),,[[-[---[[[[[[,, CS
RF02543 699 ucauuAgacccauacgCGuAacgAAagugAauuaa*[29]**[33]*aaGAGCacacauguuggGACCCGAAAGauGGUGA 829
A UA :: A CG A::GAAA::GA U ++ AG:: :::::U:::GACCCGAAA:::GGUGA
gi_545778205_gb_U000 4169252 -GAAUA---GGGGAGCCGAAGGGAAACCGAGU---*[ 8]**[ 4]*UUAAGUUGCAGGGUAUAGACCCGAAACCCGGUGA 4169325
.33444...66799***************974......8.....*..9********************************* PP
v v v v NC
,((((((((((((,<<<<---<<<<<<<____>>>>>>>---->>>>,,,<<<<-<<-<<________>>>>>>>>,,)-) CS
RF02543 830 ACUAugCcugggcAGggcGAAGccAGgGGAAACcCUggUGGAGgccCGuAgcgaUuCUGACGUGCAAAUCGaucgucagAc 910
C A::C:UG GCAGG::GAAG::: G AA C :::UGGAG::CCG+A:CG U: : UG AAA ::A CG: +GAC
gi_545778205_gb_U000 4169326 UCUAGCCAUGGGCAGGUUGAAGGUUGGGUAACACUAACUGGAGGACCGAACCGACUA-AUGUUGAAAAAUUAGCGGAUGAC 4169405
*******************************99********************9887.777788898888899******** PP
NC
)))))))))),<<<_____>>>,,,,,,]]]]]]------]-]],,[[[[[[,,,,<<<<<____>>>>>,,(((((((,, CS
RF02543 911 cuggGuaUAGGgGcGAAAGaCuAAUCGAACCauCUAGUAGCUGGUUcCcuCCGAAGuuUCCCUCAGGAuaGCuggagcuuu 991
UG:G::U GG:G GAAAG C:AAUC AACC::: UAGCUGGUUC:C:CCGAA ::U:: U ::A::GC: ::::: U
gi_545778205_gb_U000 4169406 UUGUGGCUGGGGGUGAAAGGCCAAUCAAACCGGGAGAUAGCUGGUUCUCCCCGAAAGCUAUUUAGGUAGCGCCUCGUGAAU 4169486
*************************************************************************99999933 PP
v v vv v v v v vv v v NC
,,,,,,,<<<<<<<<----<<<----<<<<<<<<<<--<<<<<<-<_____>->>>>>>.>>>>>>>>>>-->>->----> CS
RF02543 992 uuuuuAGUcuuAuccGGUAAAGCgAAUGAuUAgaGGcuucggGgacgaAAugucCucga.CCuaUUcUCAAACUUUAAAUg 1071
U +A UCU:::: GGUA:AGC A UG :::: C+ : G:G+C + +G+C:U : +C:::: CAAACU : AAU
gi_545778205_gb_U000 4169487 U---CA-UCUCCGGGGGUAGAGC-ACUGUUUCGG--CAAGGGGGUCAUCCCGACUUACCaACCCGAUGCAAACUGCGAAUA 4169560
2...22.***************8.78*9887776..889999999***99**99995543567777889************ PP
NC
>>>>>>>,<<<<<<<<<_________>>>>>>>>>,,,,,,,,,,,))))))),,,,,<<<<<<<<<<_.____>>>>>>> CS
RF02543 1072 ggUaagAagccccgguuaCUUaauUGaaccggggcauuuaAuauaaagcuccaAGUGGGCCAcUUuUGG.UAAGCAgAAgU 1151
::::AGAA UG U A::::: :AG C: :: G UAA :: :
gi_545778205_gb_U000 4169561 CCGGAGAA----------------UG-----------------UUAUCACGGGAGACACACGGCGGGUGcUAACGUCCGUC 4169608
*******6................22.................33399999999987766666666665599966666666 PP
v vv NC
>>>,,,,<<<______>>>,,,(((.((-(---(((------(-(--(((------------------(((-((((((((( CS
RF02543 1152 GGCGAUGcGGGAUGAACCgAAcGcc.ggGuUAAGGuGCcuaAgUgcacgCUcAUcuAGAuaCCAuAAAaGGUGUuggUuca 1231
G A :GG A AACC:A C: ::G:UAAGGU CC+AAGU:++:G:U A G AAA:G UGU GG :
gi_545778205_gb_U000 4169609 GUGAAGAGGGAAACAACCCAGACCGcCAGCUAAGGUCCCAAAGUCAUGGUUAAGUGGG-------AAACGAUGUGGGAAGG 4169682
6666666777778899****99999459**********************99997666.......799************* PP
vv v NC
(-------(((((,<<<--<<<_________>>>-->>><___><---<<______>>->,)))))---)))))))))))) CS
RF02543 1232 UauaGACAGCaGgAcGGUGgccAUGGAAGUCggaAUCCgCUAAGGAGUGUGUAACAACUCAcCuGCCGAAugaAccaGCCC 1312
: AGACA C::G ::GU ::C U GAAG G::AUC:::UAA:GA G:GUAA A:CUCAC::G CGA: : CC GC C
gi_545778205_gb_U000 4169683 CCCAGACAGCCAGGAUGUUGGCUUAGAAGCAGCCAUCAUUUAAAGAAAGCGUAAUAGCUCACUGGUCGAGUCGGCCUGCGC 4169763
********************************************************************************* PP
NC
)-------------------)))--)))))---)-)))))<<<<<<<<<_________>>>>>>>>>,,,,]]]]]]<-<< CS
RF02543 1313 uGAAAAUGGAUGGCGCUuAAGcguaccaCCuAUaCccggCCgucggggcAaauuuaaugccccgacGAGUAGGagGgcGug 1393
:GAA AUG A G G UAA:C:++:CACC A :C:::G C: C:::GC +AUGC:::G :G GUAGG:G:GCGU:
gi_545778205_gb_U000 4169764 GGAAGAUGUAACGGGGCUAAACCAUGCACCGAAGCUGCGGCAGCGACGCU-----UAUGCGUUGUUGGGUAGGGGAGCGUU 4169839
********9887777777999****************************5.....566*********************** PP
vv vv NC
<<<<<<.<<------<<----<<<____>>>--->>--->>>>>>>>>>-->,,,,,}}}}}},,,,,,,,,,,,,,<<<< CS
RF02543 1394 gcGgcu.gcguuGAAgcuuugggcGUgAgccuggguGGAgcagcCgccaGUgCAGAUCUUGGUGGUAGUAGCAAAUAcUCa 1473
::G : :C GAAG:U U G: GUGA :C G:UGGAG:: C:::AGUGC AU :UG:: AGUA C A A::C:
gi_545778205_gb_U000 4169840 CUGUAAgCCUGCGAAGGUGU-GCUGUGAGGCAUGCUGGAGGUAUCAGAAGUGCGAAUGCUGACAUAAGUAACGAUAAAGCG 4169919
******99999999999766.************************************************************ PP
NC
<<_______>>>>>>{{{{,,,,,{{{{,,{{,,,<<<<<<---<<_____>>->>>>>>,,,,,,{{{,((.---(( CS
RF02543 1474 AaUGAGAaCuUuGAggACuGAAGUGGaGAAGGGUUcCgugugAACaGuAgUuGaacacGgGUuAGUCGgUCC.UAAGg 1550
::UGA AA :::G::::C:G A G:::AAGGGUUCC:: : AAC: UA+U:G+: ::GGGU AGUCG: CC UAA
gi_545778205_gb_U000 4169920 GGUGAAAAGCCCGCUCGCCGGA-AGACCAAGGGUUCCUGUCCAACGUUAAUCGGGGCAGGGUGAGUCGACCCcUAA-- 4169994
********************98.5*********************************************8763666.. PP
v NC
~~~~~~~~~~~~,,,,,))----)),,,<<<<<________>>>>>,,[[[[-[[[[[[[,,,,<<<<____>>>>,,,,, CS
RF02543 1551 *[17]**[21]*auuuacCGAAAGGGAAgcgGGUUAAuAUUCCcgcACcuggacguggauuuuaugcgGuAAcgcaAaugA 1657
GGGAA:C:GGUUAAUAUUCC:G:AC:UG GU:::U A
gi_545778205_gb_U000 4169995 *[13]**[11]*----------UGGGAAACAGGUUAAUAUUCCUGUACUUGGU-GUUACUGCG--------A--------- 4170059
...6.....6............3***************************994.776655433........2......... PP
v v vvv v v v v NC
,((((((---((((-(((((((-(((<<<<<<._________>>>>>>,,,<<<<<-----<<<<<<<<<<<<<_____>> CS
RF02543 1658 acucggaGAcgccggcgggggccccgggaaGa.GUUuUCUUUuCuucuUAAcggccuauuuaCCcugcAaccgguUuaucc 1737
::G:GACG :G :GG :: ::GG:::G: G U U:C:::UU A: : ++ :: : ::: C GG AUCC
gi_545778205_gb_U000 4170060 -AGGGGGGACGGAGAAGGCUAUGUUGGCCGGGcGACGGUUGUCCCGGUUUAAGCGUGUAGGCUGGUUUUCCAGGCAAAUCC 4170139
.357899***********************997777788889999999887655554444477677777777899999999 PP
v v v v vvv vv vv v v NC
>>>>>>>>>>>----->>>>>,,,,,,<<<<<<<_____>>>>>>>,,)))---)))))))-))))---------)))))) CS
RF02543 1738 ggaGguagGGuuuaauggccgGaAgAGcgccgcauuuuuugcggcgUCcggUgugcccccgacggcCCUUGAAAAuccgag 1818
G ::: : :: + : :GA GA ::::U :::: C:: + :: CC: C: CC AAA :C::
gi_545778205_gb_U000 4170140 GGAAAAUCAAGGCUGAGGCGUGAUGACGAGGCACUACG-GUGCUGAAGCAACAAAUGCCCUGCUUCCAGGAAAAGCCUCUA 4170219
77777766655555555555688888888899999888.9999999******************99888777777776543 PP
v NC
,,,,,,,,,,,]]-]]]]]]]]],}}},,}},,,,,<<______>>,}}}},<<<<_____>>>>,,}}}},,{{{{---- CS
RF02543 1819 GgAaggaauaaauuccacgccaggcCGUACCcAUAaCCGCAuCAGGUCuCCAAGGugAauAgCCUCUaGUcgAUAGAAuAA 1899
A+ + A: ::AC+ CA:+:CGUACCC AACCG CAGGU:::CA:G :GA +A: C: :G:: U:::A AA
gi_545778205_gb_U000 4170220 --AGCAUC---AGGUAACAUCAAAUCGUACCCCAAACCGACACAGGUGGUCAGGUAGAGAAUACCAAGGCGCUUGAGAGAA 4170295
..333333...4456777899************************************************************ PP
vv v NC
{{{{{{{{-{{{,,,,,,,,,,,,,,<<<<<---<<____>>---->>>>><<<<<<<<<<<<<<-<<<<~~~~~~~>>>> CS
RF02543 1900 gGUAGgUAAGGGAAGUCGGCAAAaUAGAUCCGUAaCUUcGGgAaAAGGAUUGGCUCUgAggGcugggccc*[121]*gggc 2094
: ::GGU:A:GGAA U GGCAAAAU :: CCGUAACUUCGGGA AAGG ::G CUGA: :: GG::: :::C
gi_545778205_gb_U000 4170296 CUCGGGUGAAGGAACUAGGCAAAAUGGUGCCGUAACUUCGGGAGAAGGCACG---CUGAUAUGUAGGUGA*[ 6]*UCGC 4170372
***************************************************9...888886665555555....7..5555 PP
v vv v v NC
------>>>>>-->>>>>>>>><___>,,,,,,,[[[[[[[[[,,<<<_________>>>,,<<<<<<<<-<-<<<<____ CS
RF02543 2095 aauuAAcagCcAAcUcAGAACUGGuACGGACaAGgGGAAUCcGACUGUuUAAUUAAAACAuAGcAUugcGAcGgcccgaAa 2175
+ U :: AA:UCAG U:G+A: AC AG: G: C:ACUGUUUA U AAAACA AGCA: G:: + C:CGAAA
gi_545778205_gb_U000 4170373 GGAUGGAGCUGAAAUCAG---UCGAAGAUACCAGCUGGCUGCAACUGUUUAUUAAAAACACAGCACUGUGCAAACACGAAA 4170450
555555555667888888...9*********************************************************** PP
v v NC
_>>>>->--->>>>>>>>,,((((,<<<--<<<<<<-<--<<<----~~~~~~--->>>>>>>>-->>>>><<<<<<____ CS
RF02543 2176 ggggcGgUGACgcaAUgUGAuUuCUGCCCAGUGCUcUGAAuGuCAAa*[15]*cAAgCgCgGGUAAACGGCGGGAGUAACU 2265
G:G A::C :UGUGA: :CUGCCC GUGC:: GAA:GU AA AAGC:C::GUAAACGGCGG GUAACU
gi_545778205_gb_U000 4170451 -GUGGACGUAUACGGUGUGACGCCUGCCCGGUGCCG-GAAGGUUAAU*[32]*GAAGCCCCGGUAAACGGCGGCCGUAACU 4170555
.***********************************.********98...9..689************************* PP
NC
___>>>>>><___>,,,,,,,,,,,,,,,<<<<<<_____>>>>>>,,,,,,,,,,)))),,,]]-]]]]]]],,,,}}}- CS
RF02543 2266 AUGACUCUCuUAAgGUAGCCAAAUGCCUCGUCAucUAAUUagUGACGCGCAUGAAUGgAuUAACgAGAUUCCcACUGUCCC 2346
AU AC UC:UAA:GUAGC AAAU CCU GUC:: UAA U ::GAC GCA GAAUG: :UAA:GA :C : CUGUC:C
gi_545778205_gb_U000 4170556 AUAACGGUCCUAAGGUAGCGAAAUUCCUUGUCGGGUAAGUUCCGACCUGCACGAAUGGCGUAAUGAUGGCCAGGCUGUCUC 4170636
********************************************************************************* PP
NC
}}}}}}}}-}}}},,,,,,,,,,,.,<<<<<________>>>>>,,{{{{{{{{-{{{-{{,,,,,,{{{{-{{{{{{{,[ CS
RF02543 2347 UAcCUACcAUCUAGCGAAACCACA.GcCAAGGGAACGGGCUUGgaAccaucAGcGGGGAAAGAAGACCCUgUUGAGCUUGA 2426
:ACC:: :A:::AG GAAA A C G GAA GC G+ACC: C:G: :G: :: AAGACCC:GU :A CUU A
gi_545778205_gb_U000 4170637 CACCCGAGACUCAGUGAAAUUGAAcUCGCUGUGAAGAUGCAGUGUACCCGCGGCAAGACGGAAAGACCCCGUGAACCUUUA 4170717
*******************9977735******************************************************* PP
v v v NC
[[[---[[[[[[[,,<<<<<<<<<<<<<<<<<<---------<<<<<--<<______........................ CS
RF02543 2427 CUCUAGucuGgcaUUGugaagcgacauggggGgUGUAGaAUAaGUGGGAGcuuuuag........................ 2483
CU UAG:: G:CA UG:::A:::A : :::: :UGUAG AUA:GUGGGAG:+UUU++
gi_545778205_gb_U000 4170718 CUAUAGCUUGACACUGAACAUUGAGCCUUGAUGUGUAGGAUAGGUGGGAGGCUUUGAaguguggacgccagucugcaugga 4170798
******************************************************997************************ PP
v v v v v NC
.>>------------>>>>>>>>>>>>>->>>>>>>>>>,,,((((~~~~~~)))),,,,,]]]]]]]----]]]],,<<< CS
RF02543 2484 .gCGccagUGAAAUACCACuaCccccauugucgcuucaCUUAcucc*[68]*ggagGACAuugcCaggUGGGGAGUUUGgC 2625
:CG+C UGAAAUACCAC:: :::: : U:::U:::CU AC:: ::GGACA UG:C ::UGGG AGUUUG:C
gi_545778205_gb_U000 4170799 gCCGACCUUGAAAUACCACCCUUUAAUG-UUUGAUGUUCUAACGUU*[16]*UGCGGACAGUGUCUGGUGGGUAGUUUGAC 4170888
****************************.89************975...7..589************************** PP
NC
<_____>>>-><<<<<<___________>>>>>>,,[[,,,,((((((<<-<<<<<<_______>>>>>>--->><<____ CS
RF02543 2626 uGGGGCgGcACAuCuGuuAAAuaAUAACgCaGgUGUCCUAAGGcgaGCUCAgcGaGgACAGAAAcCuCgcGUaGAgcAAAA 2706
UGGGGCGG: C :CU::UAAA A UAAC::AG: G C AAGG:::GCU:A:C :G: C GA A:C: G:G :AG: AA
gi_545778205_gb_U000 4170889 UGGGGCGGU-CUCCUCCUAAAGAGUAACGGAGGAGCACGAAGGUUGGCUAAUCCUGGUCGGACAUCAGGAGGUUAGUGCAA 4170968
*********.*********************************************************************** PP
v v v NC
__>>,,,,)))))),,,,<<<<<<<<<_______>>>>>>>>>,<<<____>>>,]],,,,,,,,,,<<<<<<--<<<<__ CS
RF02543 2707 GGgcAAAAGCucgCUUGAUuuccauucUCAGUAugaauggaaAccgcGAAAgcgUGGCCUAUCGAUCCUuuaguucuucaa 2787
G:CA AAGC:::CUUGA:U:C: :::U A ::: :G:A: :GCGAAAGC: G C UA GAUCC U:GU :::+A
gi_545778205_gb_U000 4170969 UGGCAUAAGCCAGCUUGACUGCGAGCGUGA-CGGCGCGAGCAGGUGCGAAAGCAGGUCAUAGUGAUCCGGUGGU--UCUGA 4171046
***************************998.5679**************************************5..67788 PP
v NC
_____>>>>>>>>>>,,,,,,,...,,}}}}}--}}}}}},,,,,,,,<<<-<<<<<<<<---<<_______>>--->>>> CS
RF02543 2788 AaUUUgaagcuagAGGUGUCAG...AAAAGUUACCAcAGGGAUAACUGGcuUGUGGCgGCCAAGCGUUCAUAGCGACGUcG 2865
A :::GC:A G U G AAAAG UAC: C:GGGAUAAC G::U : ::CG CCAAG:GUUCAUA:CGACG CG
gi_545778205_gb_U000 4171047 AUGGAAGGGCCAUCGCUCAACGgauAAAAGGUACUCCGGGGAUAACAGGCUGAUACCGCCCAAGAGUUCAUAUCGACGGCG 4171127
888888899999999887654422267****************************************************** PP
NC
>>>-->>>>,,,,,,,,,,(((((((((((,,<<-<<<<<<______>>>>>>--->>,<<<<<_____>>>>>,,,,,)) CS
RF02543 2866 CUUUUUgaUCCUUCGAUGUCGGCUCUUCCUAUCaUuguGAaGCAGAAuUCacaAAGuGUuGGaUUGUUCAcCCaCuAAUAG 2946
:: UU:G:: C UCGAUGUCGGCUC UC :AUC:U:G: : G AG A : :C:AAG:GU::G::UGUUC::C::+UAA :
gi_545778205_gb_U000 4171128 GUGUUUGGCACCUCGAUGUCGGCUCAUCACAUCCUGGGGCUGAAGUAGGUCCCAAGGGUAUGGCUGUUCGCCAUUUAAAGU 4171208
********************************************************************************* PP
v NC
)))--)--))))-),,,,,<<<<<<<____>>>->>>>,,,,}}--}}}}}}}}}}},.,,((((((((--((((,<<<<< CS
RF02543 2947 GGAACGUGAGCUGGGUUUAGACCGUCGUGAGACAGGUUAGUUUUACCCUaCUgaugga.augucguugcaAcaGcAaucca 3026
GG ACG GAGCUGGGUUUA:A CGUCGUGAGACAG U: GU :: :C::C:G :GG UG::G::::+A::G: : :
gi_545778205_gb_U000 4171209 GGUACGCGAGCUGGGUUUAGAACGUCGUGAGACAGUUCGGUCCCUAUCUGCCGUGGGCgCUGGAGAACUGAGGGGGGCUGC 4171289
**********************************************************98999999999************ PP
v v v NC
<<<_______________>>>>>>>><<<<<---<<<----<<<<<<<<<<<.____.>>>>>>-->>>>>--->>>-->> CS
RF02543 3027 gccuAGUACGAGAGGAACggcugguucggAuAaUUggUuuucGcggcuGgcu.GAaa.agcCagUGccgCgAAGcuAcCaU 3105
:CCUAGUACGAGAGGA CGG:: : CG:AU A UGGU U :::GG UG:C: G A :G:CA UGCC::: AGCUA AU
gi_545778205_gb_U000 4171290 UCCUAGUACGAGAGGACCGGAGUGGACGCAUCACUGGUGU-UCGGGUUGUCAuGCCAaUGGCACUGCCCGGUAGCUA-AAU 4171368
****************************************.8888888877637777457788888888899*****.*** PP
v NC
>>>,..<<<----<<<<<___________>>>>>---->>>,))))--..--.)))))))),,,,,,<<<<<<<_ CS
RF02543 3106 ccgu..uggAUuAuggCUGAAcGCCUCUAAGccaGAAuccaugCugga..Aa.gcaacgacuuuuuccccccccu 3175
:CG :GAU+A::GCUGAA GC UCUAAGC::GAA C: :C::GA ::::C::C C ::CCC:U
gi_545778205_gb_U000 4171369 GCGGaaGAGAUAAGUGCUGAAAGCAUCUAAGCACGAAACUUGCCCCGAgaU-gAGUUCUCC-----CUGACCCUU 4171437
***93345579************************************9744.599999999.....344444443 PP
v v vv v vv v NC
~~~~~~~>>>>>>>,,,(((((<<<<<_______>>>>>,,,,<<<<<<<<<-<<--<--<<<<-<<<<<<<<______>> CS
RF02543 3176 *[112]*gggggggguugaAucccccGuAGACGACggggaUauccgaccgGGUgcUGuAAgcgguacaGcagccUuuuUgc 3361
:GGG:: +: : C:: G AGACGAC ::G+U + ::: :GG :UGUAA:CG: +U
gi_545778205_gb_U000 4171438 *[ 2]*AGGGUCCUGAAGGAACGUUGAAGACGACGACGUUGA-UAGGCCGGGUGUGUAAGCGCA---------GCGAU-- 4171501
....4..444444556666667*******************65.56666777779********95.........45666.. PP
v vv v vv v NC
>>>>>>>>>>>--->>---->>>->>>>>>,,,))))):: CS
RF02543 3362 ugCgguccgcuGAGgcUuAgCCcuggucggauagaUucgu 3401
:CG:UGAG: A CC: :::++ A : :G
gi_545778205_gb_U000 4171502 ------GCGUUGAGCU--AACCGGUACUAAUGAACCGUGA 4171533
......9*******75..66999999999999999***** PP
>> |
