Alignments: NC
:::::::::::::::::::::::<<<<<<-----<<____>>------>>>>>->,,,,,,,,,<<____>>,,,<<<<<- CS
RF02543 1 ugacCUuaaaUcAgguaaGAuUAcCcgCuGAAuUUAAGCAUAUuAaUAaGcgGAgGAAAAGAAAcuAACaagGAUUcccuu 81
+ CC UA+ U+A A+G ACC:G :GAA+U AA CAU U A UA: C:GAGGAAAAGAAA::AAC ::GAUUCCC:
gi_545778205_gb_U000 4210202 AAUCCAUAGGUUAAUGAGGCGAACCGGGGGAACUGAAACAUCUAAGUACCCCGAGGAAAAGAAAUCAACCGAGAUUCCCCC 4210282
********************************************************************************* PP
v NC
----<<_____>>---->>>>>,,[[[[,,.<<<<<<<<<<<<<<<<_______>>>>>>>>>>>>>>>>,,,,((((((- CS
RF02543 82 AGUAgcGGCGAgcGAAgagggAAuAGCcCA.cgcugcaacuccgcccucuuuuugggcggaguugcagcgUauaggggccu 161
AGUAGCGGCGAGCGAA :GGGA AGCCCA + G: :C:
gi_545778205_gb_U000 4210283 AGUAGCGGCGAGCGAACGGGGAGCAGCCCAg----------------------A----------------GCCUGAAUCA- 4210324
******************************2......................2................4444664444. PP
v vvvv vvvv v NC
((((-(((((((-(((((((,,,<-<<<<______>>>>>,,<___>,,<<_______>>,,,,,)))))))--))))))) CS
RF02543 162 ccucagccgcggcccccgccuAAgUccccUgGAAuggggcaccAuAgAGGGUGAgAguCCcGUauggcgggguaccgcggc 242
G: :::G+ :: AAG C::CUGGAA G::GC C:AUA:AGGGUGA AG CCCGUA :: U C::: :C
gi_545778205_gb_U000 4210325 -----GUGUGUGUGUUAGUGGAAG-CGUCUGGAAAGGCGCGCGAUACAGGGUGACAGCCCCGUACACAAAAAUGCACAUGC 4210399
.....4444444233333445666.**************************************986554444444444444 PP
v NC
-----))))))))-)),,,,,,,,<<<<<<<___..._____>>>>>>>,,,,.,<<<<<________>>>>>,,]]]],, CS
RF02543 243 uuuaugaggggccuccaaaGAGUCGgGuugcUUG...ggAaUgcagCcCaAAg.UgGguGGUAaAuUuCauCcAAgGCUAA 319
U :G: :C A+GAGU :G : G: GG AU:C : C: AA+ UGGG:GG A + UC:UCCAAGGCUAA
gi_545778205_gb_U000 4210400 UG-------UGAGCUCGAUGAGUAGGGCGGGACAcguGGUAUCCUGUCUGAAUaUGGGGGG--ACCAUCCUCCAAGGCUAA 4210471
44.......4444577999999999999998643111345678999999999845666665..45667999999******* PP
NC
,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,<<____>>,,,,,,,,,,,,,,,<<<<__.__>>>>,,,,,,,,,,,,,, CS
RF02543 320 AUAuuagcaaGAGACCGAUAGcgaACAAGUAccGUGAggGAAAGaUGAAAAGaACucuGA.AaagaGAGUUAAAuAGuAcg 399
AUA+U + A GACCGAUAG+GAAC AGUACCGUGAGGGAAAG GAAAAGAAC:C:G A:G:GAGU AAA AG AC
gi_545778205_gb_U000 4210472 AUACUCCUGACUGACCGAUAGUGAACCAGUACCGUGAGGGAAAGGCGAAAAGAACCCCGGcGAGGGGAGUGAAAAAGAACC 4210552
**********************************************************87368999*************** PP
v v v NC
,,,,,,,,,,,,,,,,,,,,(~~~~~~~),,<<<<________>>>>{{{{{{,,,,(((((((((((((,,<<<--<<<< CS
RF02543 400 UGAAAuuGuUaAgAgGgAAgc*[225]*gACCCGUCUUGAAACACGGACCAAGGAGUccaacauguguGCgAGuguuuggg 698
UGAAA++GU +A AAGC G CC U UUG A A GG::CA: GA U:::A::::: ::C+AG U+ ::
gi_545778205_gb_U000 4210553 UGAAACCGUGUACGUACAAGC*[ 29]*GUACCUU-UUGUAUAAUGGGUCAGCGACUUAUAUUCUGUAGCAAGGUUAACC- 4210653
*********999999888876....6..4556644.788888899******************************99765. PP
v v v NC
<<____>>>>>>-->>>,,,<<____>>,,,,,,,~~~~~~~~~~~~,,,,))))))))))))),,[[-[---[[[[[[,, CS
RF02543 699 ucauuAgacccauacgCGuAacgAAagugAauuaa*[29]**[33]*aaGAGCacacauguuggGACCCGAAAGauGGUGA 829
A UA :: A CG A::GAAA::GA U ++ AG:: :::::U:::GACCCGAAA:::GGUGA
gi_545778205_gb_U000 4210654 -GAAUA---GGGGAGCCGAAGGGAAACCGAGU---*[ 8]**[ 4]*UUAAGUUGCAGGGUAUAGACCCGAAACCCGGUGA 4210727
.33444...66799***************974......8.....*..9********************************* PP
v v v v NC
,((((((((((((,<<<<---<<<<<<<____>>>>>>>---->>>>,,,<<<<-<<-<<________>>>>>>>>,,)-) CS
RF02543 830 ACUAugCcugggcAGggcGAAGccAGgGGAAACcCUggUGGAGgccCGuAgcgaUuCUGACGUGCAAAUCGaucgucagAc 910
C A::C:UG GCAGG::GAAG::: G AA C :::UGGAG::CCG+A:CG U: : UG AAA ::A CG: +GAC
gi_545778205_gb_U000 4210728 UCUAGCCAUGGGCAGGUUGAAGGUUGGGUAACACUAACUGGAGGACCGAACCGACUA-AUGUUGAAAAAUUAGCGGAUGAC 4210807
*******************************99********************9887.777788898888899******** PP
NC
)))))))))),<<<_____>>>,,,,,,]]]]]]------]-]],,[[[[[[,,,,<<<<<____>>>>>,,(((((((,, CS
RF02543 911 cuggGuaUAGGgGcGAAAGaCuAAUCGAACCauCUAGUAGCUGGUUcCcuCCGAAGuuUCCCUCAGGAuaGCuggagcuuu 991
UG:G::U GG:G GAAAG C:AAUC AACC::: UAGCUGGUUC:C:CCGAA ::U:: U ::A::GC: ::::: U
gi_545778205_gb_U000 4210808 UUGUGGCUGGGGGUGAAAGGCCAAUCAAACCGGGAGAUAGCUGGUUCUCCCCGAAAGCUAUUUAGGUAGCGCCUCGUGAAU 4210888
*************************************************************************99999933 PP
v v vv v v v v vv v v NC
,,,,,,,<<<<<<<<----<<<----<<<<<<<<<<--<<<<<<-<_____>->>>>>>.>>>>>>>>>>-->>->----> CS
RF02543 992 uuuuuAGUcuuAuccGGUAAAGCgAAUGAuUAgaGGcuucggGgacgaAAugucCucga.CCuaUUcUCAAACUUUAAAUg 1071
U +A UCU:::: GGUA:AGC A UG :::: C+ : G:G+C + +G+C:U : +C:::: CAAACU : AAU
gi_545778205_gb_U000 4210889 U---CA-UCUCCGGGGGUAGAGC-ACUGUUUCGG--CAAGGGGGUCAUCCCGACUUACCaACCCGAUGCAAACUGCGAAUA 4210962
2...22.***************8.78*9887776..889999999***99**99995543567777889************ PP
NC
>>>>>>>,<<<<<<<<<_________>>>>>>>>>,,,,,,,,,,,))))))),,,,,<<<<<<<<<<_.____>>>>>>> CS
RF02543 1072 ggUaagAagccccgguuaCUUaauUGaaccggggcauuuaAuauaaagcuccaAGUGGGCCAcUUuUGG.UAAGCAgAAgU 1151
::::AGAA UG U A::::: :AG C: :: G UAA :: :
gi_545778205_gb_U000 4210963 CCGGAGAA----------------UG-----------------UUAUCACGGGAGACACACGGCGGGUGcUAACGUCCGUC 4211010
*******6................22.................33399999999987766666666665599966666666 PP
v vv NC
>>>,,,,<<<______>>>,,,(((.((-(---(((------(-(--(((------------------(((-((((((((( CS
RF02543 1152 GGCGAUGcGGGAUGAACCgAAcGcc.ggGuUAAGGuGCcuaAgUgcacgCUcAUcuAGAuaCCAuAAAaGGUGUuggUuca 1231
G A :GG A AACC:A C: ::G:UAAGGU CC+AAGU:++:G:U A G AAA:G UGU GG :
gi_545778205_gb_U000 4211011 GUGAAGAGGGAAACAACCCAGACCGcCAGCUAAGGUCCCAAAGUCAUGGUUAAGUGGG-------AAACGAUGUGGGAAGG 4211084
6666666777778899****99999459**********************99997666.......799************* PP
vv v NC
(-------(((((,<<<--<<<_________>>>-->>><___><---<<______>>->,)))))---)))))))))))) CS
RF02543 1232 UauaGACAGCaGgAcGGUGgccAUGGAAGUCggaAUCCgCUAAGGAGUGUGUAACAACUCAcCuGCCGAAugaAccaGCCC 1312
: AGACA C::G ::GU ::C U GAAG G::AUC:::UAA:GA G:GUAA A:CUCAC::G CGA: : CC GC C
gi_545778205_gb_U000 4211085 CCCAGACAGCCAGGAUGUUGGCUUAGAAGCAGCCAUCAUUUAAAGAAAGCGUAAUAGCUCACUGGUCGAGUCGGCCUGCGC 4211165
********************************************************************************* PP
NC
)-------------------)))--)))))---)-)))))<<<<<<<<<_________>>>>>>>>>,,,,]]]]]]<-<< CS
RF02543 1313 uGAAAAUGGAUGGCGCUuAAGcguaccaCCuAUaCccggCCgucggggcAaauuuaaugccccgacGAGUAGGagGgcGug 1393
:GAA AUG A G G UAA:C:++:CACC A :C:::G C: C:::GC +AUGC:::G :G GUAGG:G:GCGU:
gi_545778205_gb_U000 4211166 GGAAGAUGUAACGGGGCUAAACCAUGCACCGAAGCUGCGGCAGCGACGCU-----UAUGCGUUGUUGGGUAGGGGAGCGUU 4211241
********9887777777999****************************5.....566*********************** PP
vv vv NC
<<<<<<.<<------<<----<<<____>>>--->>--->>>>>>>>>>-->,,,,,}}}}}},,,,,,,,,,,,,,<<<< CS
RF02543 1394 gcGgcu.gcguuGAAgcuuugggcGUgAgccuggguGGAgcagcCgccaGUgCAGAUCUUGGUGGUAGUAGCAAAUAcUCa 1473
::G : :C GAAG:U U G: GUGA :C G:UGGAG:: C:::AGUGC AU :UG:: AGUA C A A::C:
gi_545778205_gb_U000 4211242 CUGUAAgCCUGCGAAGGUGU-GCUGUGAGGCAUGCUGGAGGUAUCAGAAGUGCGAAUGCUGACAUAAGUAACGAUAAAGCG 4211321
******99999999999766.************************************************************ PP
NC
<<_______>>>>>>{{{{,,,,,{{{{,,{{,,,<<<<<<---<<_____>>->>>>>>,,,,,,{{{,((.---(( CS
RF02543 1474 AaUGAGAaCuUuGAggACuGAAGUGGaGAAGGGUUcCgugugAACaGuAgUuGaacacGgGUuAGUCGgUCC.UAAGg 1550
::UGA AA :::G::::C:G A G:::AAGGGUUCC:: : AAC: UA+U:G+: ::GGGU AGUCG: CC UAA
gi_545778205_gb_U000 4211322 GGUGAAAAGCCCGCUCGCCGGA-AGACCAAGGGUUCCUGUCCAACGUUAAUCGGGGCAGGGUGAGUCGACCCcUAA-- 4211396
********************98.5*********************************************8763666.. PP
v NC
~~~~~~~~~~~~,,,,,))----)),,,<<<<<________>>>>>,,[[[[-[[[[[[[,,,,<<<<____>>>>,,,,, CS
RF02543 1551 *[17]**[21]*auuuacCGAAAGGGAAgcgGGUUAAuAUUCCcgcACcuggacguggauuuuaugcgGuAAcgcaAaugA 1657
GGGAA:C:GGUUAAUAUUCC:G:AC:UG GU:::U A
gi_545778205_gb_U000 4211397 *[11]**[13]*----------UGGGAAACAGGUUAAUAUUCCUGUACUUGGU-GUUACUGCG--------A--------- 4211461
...6.....6............3***************************994.776655433........2......... PP
v v vvv v v v v NC
,((((((---((((-(((((((-(((<<<<<<._________>>>>>>,,,<<<<<-----<<<<<<<<<<<<<_____>> CS
RF02543 1658 acucggaGAcgccggcgggggccccgggaaGa.GUUuUCUUUuCuucuUAAcggccuauuuaCCcugcAaccgguUuaucc 1737
::G:GACG :G :GG :: ::GG:::G: G U U:C:::UU A: : ++ :: : ::: C GG AUCC
gi_545778205_gb_U000 4211462 -AGGGGGGACGGAGAAGGCUAUGUUGGCCGGGcGACGGUUGUCCCGGUUUAAGCGUGUAGGCUGGUUUUCCAGGCAAAUCC 4211541
.357899***********************997777788889999999887655554444477677777777899999999 PP
v v v v vvv vv vv v v NC
>>>>>>>>>>>----->>>>>,,,,,,<<<<<<<_____>>>>>>>,,)))---)))))))-))))---------)))))) CS
RF02543 1738 ggaGguagGGuuuaauggccgGaAgAGcgccgcauuuuuugcggcgUCcggUgugcccccgacggcCCUUGAAAAuccgag 1818
G ::: : :: + : :GA GA ::::U :::: C:: + :: CC: C: CC AAA :C::
gi_545778205_gb_U000 4211542 GGAAAAUCAAGGCUGAGGCGUGAUGACGAGGCACUACG-GUGCUGAAGCAACAAAUGCCCUGCUUCCAGGAAAAGCCUCUA 4211621
77777766655555555555688888888899999888.9999999******************99888777777776543 PP
v NC
,,,,,,,,,,,]]-]]]]]]]]],}}},,}},,,,,<<______>>,}}}},<<<<_____>>>>,,}}}},,{{{{---- CS
RF02543 1819 GgAaggaauaaauuccacgccaggcCGUACCcAUAaCCGCAuCAGGUCuCCAAGGugAauAgCCUCUaGUcgAUAGAAuAA 1899
A+ + A: ::AC+ CA:+:CGUACCC AACCG CAGGU:::CA:G :GA +A: C: :G:: U:::A AA
gi_545778205_gb_U000 4211622 --AGCAUC---AGGUAACAUCAAAUCGUACCCCAAACCGACACAGGUGGUCAGGUAGAGAAUACCAAGGCGCUUGAGAGAA 4211697
..333333...4456777899************************************************************ PP
vv v NC
{{{{{{{{-{{{,,,,,,,,,,,,,,<<<<<---<<____>>---->>>>><<<<<<<<<<<<<<-<<<<~~~~~~~>>>> CS
RF02543 1900 gGUAGgUAAGGGAAGUCGGCAAAaUAGAUCCGUAaCUUcGGgAaAAGGAUUGGCUCUgAggGcugggccc*[121]*gggc 2094
: ::GGU:A:GGAA U GGCAAAAU :: CCGUAACUUCGGGA AAGG ::G CUGA: :: GG::: :::C
gi_545778205_gb_U000 4211698 CUCGGGUGAAGGAACUAGGCAAAAUGGUGCCGUAACUUCGGGAGAAGGCACG---CUGAUAUGUAGGUGA*[ 6]*UCGC 4211774
***************************************************9...888886665555555....7..5555 PP
v vv v v NC
------>>>>>-->>>>>>>>><___>,,,,,,,[[[[[[[[[,,<<<_________>>>,,<<<<<<<<-<-<<<<____ CS
RF02543 2095 aauuAAcagCcAAcUcAGAACUGGuACGGACaAGgGGAAUCcGACUGUuUAAUUAAAACAuAGcAUugcGAcGgcccgaAa 2175
+ U :: AA:UCAG U:G+A: AC AG: G: C:ACUGUUUA U AAAACA AGCA: G:: + C:CGAAA
gi_545778205_gb_U000 4211775 GGAUGGAGCUGAAAUCAG---UCGAAGAUACCAGCUGGCUGCAACUGUUUAUUAAAAACACAGCACUGUGCAAACACGAAA 4211852
555555555667888888...9*********************************************************** PP
v v NC
_>>>>->--->>>>>>>>,,((((,<<<--<<<<<<-<--<<<----~~~~~~--->>>>>>>>-->>>>><<<<<<____ CS
RF02543 2176 ggggcGgUGACgcaAUgUGAuUuCUGCCCAGUGCUcUGAAuGuCAAa*[15]*cAAgCgCgGGUAAACGGCGGGAGUAACU 2265
G:G A::C :UGUGA: :CUGCCC GUGC:: GAA:GU AA AAGC:C::GUAAACGGCGG GUAACU
gi_545778205_gb_U000 4211853 -GUGGACGUAUACGGUGUGACGCCUGCCCGGUGCCG-GAAGGUUAAU*[32]*GAAGCCCCGGUAAACGGCGGCCGUAACU 4211957
.***********************************.********98...9..689************************* PP
NC
___>>>>>><___>,,,,,,,,,,,,,,,<<<<<<_____>>>>>>,,,,,,,,,,)))),,,]]-]]]]]]],,,,}}}- CS
RF02543 2266 AUGACUCUCuUAAgGUAGCCAAAUGCCUCGUCAucUAAUUagUGACGCGCAUGAAUGgAuUAACgAGAUUCCcACUGUCCC 2346
AU AC UC:UAA:GUAGC AAAU CCU GUC:: UAA U ::GAC GCA GAAUG: :UAA:GA :C : CUGUC:C
gi_545778205_gb_U000 4211958 AUAACGGUCCUAAGGUAGCGAAAUUCCUUGUCGGGUAAGUUCCGACCUGCACGAAUGGCGUAAUGAUGGCCAGGCUGUCUC 4212038
********************************************************************************* PP
NC
}}}}}}}}-}}}},,,,,,,,,,,.,<<<<<________>>>>>,,{{{{{{{{-{{{-{{,,,,,,{{{{-{{{{{{{,[ CS
RF02543 2347 UAcCUACcAUCUAGCGAAACCACA.GcCAAGGGAACGGGCUUGgaAccaucAGcGGGGAAAGAAGACCCUgUUGAGCUUGA 2426
:ACC:: :A:::AG GAAA A C G GAA GC G+ACC: C:G: :G: :: AAGACCC:GU :A CUU A
gi_545778205_gb_U000 4212039 CACCCGAGACUCAGUGAAAUUGAAcUCGCUGUGAAGAUGCAGUGUACCCGCGGCAAGACGGAAAGACCCCGUGAACCUUUA 4212119
*******************9977735******************************************************* PP
v v v NC
[[[---[[[[[[[,,<<<<<<<<<<<<<<<<<<---------<<<<<--<<______........................ CS
RF02543 2427 CUCUAGucuGgcaUUGugaagcgacauggggGgUGUAGaAUAaGUGGGAGcuuuuag........................ 2483
CU UAG:: G:CA UG:::A:::A : :::: :UGUAG AUA:GUGGGAG:+UUU++
gi_545778205_gb_U000 4212120 CUAUAGCUUGACACUGAACAUUGAGCCUUGAUGUGUAGGAUAGGUGGGAGGCUUUGAaguguggacgccagucugcaugga 4212200
******************************************************997************************ PP
v v v v v NC
.>>------------>>>>>>>>>>>>>->>>>>>>>>>,,,((((~~~~~~)))),,,,,]]]]]]]----]]]],,<<< CS
RF02543 2484 .gCGccagUGAAAUACCACuaCccccauugucgcuucaCUUAcucc*[68]*ggagGACAuugcCaggUGGGGAGUUUGgC 2625
:CG+C UGAAAUACCAC:: :::: : U:::U:::CU AC:: ::GGACA UG:C ::UGGG AGUUUG:C
gi_545778205_gb_U000 4212201 gCCGACCUUGAAAUACCACCCUUUAAUG-UUUGAUGUUCUAACGUU*[16]*UGCGGACAGUGUCUGGUGGGUAGUUUGAC 4212290
****************************.89************975...7..589************************** PP
NC
<_____>>>-><<<<<<___________>>>>>>,,[[,,,,((((((<<-<<<<<<_______>>>>>>--->><<____ CS
RF02543 2626 uGGGGCgGcACAuCuGuuAAAuaAUAACgCaGgUGUCCUAAGGcgaGCUCAgcGaGgACAGAAAcCuCgcGUaGAgcAAAA 2706
UGGGGCGG: C :CU::UAAA A UAAC::AG: G C AAGG:::GCU:A:C :G: C GA A:C: G:G :AG: AA
gi_545778205_gb_U000 4212291 UGGGGCGGU-CUCCUCCUAAAGAGUAACGGAGGAGCACGAAGGUUGGCUAAUCCUGGUCGGACAUCAGGAGGUUAGUGCAA 4212370
*********.*********************************************************************** PP
v v v NC
__>>,,,,)))))),,,,<<<<<<<<<_______>>>>>>>>>,<<<____>>>,]],,,,,,,,,,<<<<<<--<<<<__ CS
RF02543 2707 GGgcAAAAGCucgCUUGAUuuccauucUCAGUAugaauggaaAccgcGAAAgcgUGGCCUAUCGAUCCUuuaguucuucaa 2787
G:CA AAGC:::CUUGA:U:C: :::U A ::: :G:A: :GCGAAAGC: G C UA GAUCC U:GU :::+A
gi_545778205_gb_U000 4212371 UGGCAUAAGCCAGCUUGACUGCGAGCGUGA-CGGCGCGAGCAGGUGCGAAAGCAGGUCAUAGUGAUCCGGUGGU--UCUGA 4212448
***************************998.5679**************************************5..67788 PP
v NC
_____>>>>>>>>>>,,,,,,,...,,}}}}}--}}}}}},,,,,,,,<<<-<<<<<<<<---<<_______>>--->>>> CS
RF02543 2788 AaUUUgaagcuagAGGUGUCAG...AAAAGUUACCAcAGGGAUAACUGGcuUGUGGCgGCCAAGCGUUCAUAGCGACGUcG 2865
A :::GC:A G U G AAAAG UAC: C:GGGAUAAC G::U : ::CG CCAAG:GUUCAUA:CGACG CG
gi_545778205_gb_U000 4212449 AUGGAAGGGCCAUCGCUCAACGgauAAAAGGUACUCCGGGGAUAACAGGCUGAUACCGCCCAAGAGUUCAUAUCGACGGCG 4212529
888888899999999887654422267****************************************************** PP
NC
>>>-->>>>,,,,,,,,,,(((((((((((,,<<-<<<<<<______>>>>>>--->>,<<<<<_____>>>>>,,,,,)) CS
RF02543 2866 CUUUUUgaUCCUUCGAUGUCGGCUCUUCCUAUCaUuguGAaGCAGAAuUCacaAAGuGUuGGaUUGUUCAcCCaCuAAUAG 2946
:: UU:G:: C UCGAUGUCGGCUC UC :AUC:U:G: : G AG A : :C:AAG:GU::G::UGUUC::C::+UAA :
gi_545778205_gb_U000 4212530 GUGUUUGGCACCUCGAUGUCGGCUCAUCACAUCCUGGGGCUGAAGUAGGUCCCAAGGGUAUGGCUGUUCGCCAUUUAAAGU 4212610
********************************************************************************* PP
v NC
)))--)--))))-),,,,,<<<<<<<____>>>->>>>,,,,}}--}}}}}}}}}}},.,,((((((((--((((,<<<<< CS
RF02543 2947 GGAACGUGAGCUGGGUUUAGACCGUCGUGAGACAGGUUAGUUUUACCCUaCUgaugga.augucguugcaAcaGcAaucca 3026
GG ACG GAGCUGGGUUUA:A CGUCGUGAGACAG U: GU :: :C::C:G :GG UG::G::::+A::G: : :
gi_545778205_gb_U000 4212611 GGUACGCGAGCUGGGUUUAGAACGUCGUGAGACAGUUCGGUCCCUAUCUGCCGUGGGCgCUGGAGAACUGAGGGGGGCUGC 4212691
**********************************************************9899999999************* PP
v v v NC
<<<_______________>>>>>>>><<<<<---<<<----<<<<<<<<<<<.____.>>>>>>-->>>>>--->>>-->> CS
RF02543 3027 gccuAGUACGAGAGGAACggcugguucggAuAaUUggUuuucGcggcuGgcu.GAaa.agcCagUGccgCgAAGcuAcCaU 3105
:CCUAGUACGAGAGGA CGG:: : CG:AU A UGGU U :::GG UG:C: G A :G:CA UGCC::: AGCUA AU
gi_545778205_gb_U000 4212692 UCCUAGUACGAGAGGACCGGAGUGGACGCAUCACUGGUGU-UCGGGUUGUCAuGCCAaUGGCACUGCCCGGUAGCUA-AAU 4212770
****************************************.8888888877637777457788888888899*****.*** PP
v v NC
>>>,..<<<----<<<<<___________>>>>>---->>>,))))--..--.)))))))),,,,,,<<<<<<~~~~~~~> CS
RF02543 3106 ccgu..uggAUuAuggCUGAAcGCCUCUAAGccaGAAuccaugCugga..Aa.gcaacgacuuuuuccccccc*[115]*g 3289
:CG :GAU+A::GCUGAA GC UCUAAGC::GAA C: :C::GA ::::C::C U +C:CC::
gi_545778205_gb_U000 4212771 GCGGaaGAGAUAAGUGCUGAAAGCAUCUAAGCACGAAACUUGCCCCGAgaU-gAGUUCUCC-CUGACUCCUUG*[ 8]*G 4212850
***93345579************************************9744.599999999.55555555553....5..3 PP
vv v v NC
>>>>>,,,(((((<<<<<_______>>>>>,,,,<<<<<<<<<-<<--<--<<<<-<<<<<<<<______>>>>>>>>>>> CS
RF02543 3290 gggggguugaAucccccGuAGACGACggggaUauccgaccgGGUgcUGuAAgcgguacaGcagccUuuuUgcugCgguccg 3370
::GG: C:: G AGACGAC ::G+U +::G C GG :UGUAA:CG: +U :CG
gi_545778205_gb_U000 4212851 AAGGAA-------CGUUGAAGACGACGACGUUGAUAGGCC-GGGUGUGUAAGCGCA---------GCGAU--------GCG 4212906
555554.......*******************87777655.55568********95.........45666........9** PP
v v vv NC
>>--->>---->>>->>>>>>,,,))))):: CS
RF02543 3371 cuGAGgcUuAgCCcuggucggauagaUucgu 3401
:UGAG: A CC G C::AU G
gi_545778205_gb_U000 4212907 UUGAGCU--AACCG-GUACUAAU------GA 4212928
*****75..55776.55566676......** PP
>> |
