gi_545778205_gb_U000_135

cmsearch-Rfam

Family :

Mg_sensor

Id:

RF01056

Type:

Cis-reg; riboswitch;

Taxonomy:

Eukaryota; Bacteria;

Ontology:

Not found

Description:

The Magnesium sensor RNA element is a cis-regulatory element that regulates the expression of the magnesium
transporter protein MgtA. It is located in the 5' UTR of this gene. The element
adopts different structures depending on the presence or absence of Mg2+, this has the affect
of regulating whether transcription reads through the mgtA coding region or stops within the 5'
UTR.

Score:

125.9

E-value:

7.9e-27

From sequence:

4467416

To sequence:

4467531

Alignments:

                                                                                                                 NC
                               (((((((((((,,,,,<<<_________>>>,,,,<<<<<______>>>>>,,,,,,,,)))))))))))----------. CS
               RF01056       1 CuuaCCGGagguuaUAuGGAcCCuGAuCCCaCuCCuCucCCuCGAuGgaGaauuuuuuuuuuCCGGuaaGCCuGucUuuu. 80     
                               CUUACCGGAGGUUAUAUGGA+CCUGAUCCCAC CCUCUCCCUCGA GGAGA+U+++++UUUUCCGGUAAGCC GUCUUUU 
  gi_545778205_gb_U000 4467416 CUUACCGGAGGUUAUAUGGAACCUGAUCCCACGCCUCUCCCUCGACGGAGAUUAAAACUUUUCCGGUAAGCCCGUCUUUUc 4467496
                               ****************************************************************************99999 PP

                                    v               v              NC
                               <<<<<<<<<<_______>>>>>>>>>>:::::::: CS
               RF01056      81 gCuGccuuaCCGGAuGuGuaaggCaGcgACgUuaU 115    
                               :C:GC UUACCGGAUG+GUAA GC:G:GACGUU+U
  gi_545778205_gb_U000 4467497 ACGGCGUUACCGGAUGCGUAAGGCCGUGACGUUUU 4467531
                               *********************************** PP

RNAfold
>gi_545778205_gb_U000_135
UUACCGGAGGUUAUAUGGAACCUGAUCCCACGCCUCUCCCUCGACGGAGA
UUAAAACUUUUCCGGUAAGCCCGUCUUUUCACGGCGUUACCGGAUGCGUA
AGGCCGUGACGUUUU
(((((((((((.....(((......)))...)))(((((......)))))..........))))))))..........(((((((.(((((....).)))).)))))))...... (-36.30)

Length sequence

: 115

Length match:

114