gi_545778205_gb_U000_136

cmsearch-Rfam

Family :

MicA

Id:

RF00078

Type:

Gene; sRNA;

Taxonomy:

Eukaryota; Bacteria;

Ontology:

GO:0003729 mRNA bindingRF00078

Description:

not description

Score:

83.2

E-value:

2.6e-13

From sequence:

2814802

To sequence:

2814873

Alignments:

                                                                                                           NC
                               :::::::::::::::::::::::<<<<-<<<_____>>>->>>>--------<<<<<<<_____>>>>>>>:::: CS
               RF00078       1 GAAAGACGCGCAUUUGUUAUCAUCAUCCcUguuuuucAgAGAUGUUUAuUUUGGCCACcguaaagGUGGCCUUUU 75     
                               GAAAGACGCGCAUUUGUUAUCAUCAUCCCUG+ UU CAGAGAUG   AUUUUGGCCAC: +   :GUGGCCUUUU
  gi_545778205_gb_U000 2814802 GAAAGACGCGCAUUUGUUAUCAUCAUCCCUGAAUU-CAGAGAUGAA-AUUUUGGCCACUCA-CGAGUGGCCUUUU 2814873
                               ********************************999.********65.68899*******88.67*********** PP

RNAfold
>gi_545778205_gb_U000_136
UGAAAGACGCGCAUUUGUUAUCAUCAUCCCUGAAUUCAGAGAUGAAAUUU
UGGCCACUCACGAGUGGCCUUUUUC
(((..((((......)))).)))(((((.(((....))).)))))......(((((((....)))))))...... (-20.10)

Length sequence

: 75

Length match:

70