gi_545778205_gb_U000_137

cmsearch-Rfam

Family :

MicC

Id:

RF00121

Type:

Gene; sRNA;

Taxonomy:

Bacteria;

Ontology:

Not found

Description:

MicC (previously known as IS063 [1]) is located between the ompN and ydbK genes in E.
coli. This family is thought to be a regulator of OmpC expression. Along with Rfam:RF00033
this family may act in conjunction with EnvZ-OmpR two-component system to control the OmpF/OmpC protein
ratio in response to a variety of environmental stimuli [2].

Score:

123.6

E-value:

8.3e-21

From sequence:

1437118

To sequence:

1437238

Alignments:

                                                                                                                 NC
                               ::::::<<<<<____>>->>>,,,,,,,,,,,,,,,,,<<<<<<_______________________>>>>>>-------- CS
               RF00121       1 CguGUUAuAUGCCUUUAUUgUCAcAaaUUuuUuUUguugcuGgcuCAUUgauaguuAuuAUUaaUUugcCagcaaAUAAAu 81     
                               CG GUUAUAUGCCUUUAUUGUCACA AUUUU UUU+ UG:UGG:+CAUUG+  +UU   A U AUUU:CCA:CA+AUAAA+
  gi_545778205_gb_U000 1437118 CGGGUUAUAUGCCUUUAUUGUCACAGAUUUUAUUUUCUGUUGGGCCAUUGC--AUUGCCACUGAUUUUCCAACAUAUAAAA 1437196
                               ***************************************************..**************************** PP

                                                                          NC
                               -<<-<<<<<<<<<<____>>>>>>>>>>>>:::::::::::: CS
               RF00121      82 uGACAAGCCCGaACauuuGUuCGGGCUUUUUUUuuggauccA 123    
                               +GACAAGCCCG:ACA+U+GU:CGGGCUUUUUUUUU+GA +  
  gi_545778205_gb_U000 1437197 AGACAAGCCCGAACAGUCGUCCGGGCUUUUUUUUUAGAAUUG 1437238
                               ****************************************** PP

RNAfold
>gi_545778205_gb_U000_137
CGGGUUAUAUGCCUUUAUUGUCACAGAUUUUAUUUUCUGUUGGGCCAUUG
CAUUGCCACUGAUUUUCCAACAUAUAAAAAGACAAGCCCGAACAGUCGUC
CGGGCUUUUUUUUUAGAAUUGG
..(((...((((.......((((((((........)))))..)))....)))).))).........((((....((((((((.(((((((.((....)).)))))))))))))))...)))) (-30.50)

Length sequence

: 122

Length match:

119