gi_545778205_gb_U000_139

cmsearch-Rfam

Family :

MicX

Id:

RF01808

Type:

Gene; sRNA;

Taxonomy:

Bacteria;

Ontology:

Not found

Description:

not description

Score:

34.1

E-value:

1.4e-05

From sequence:

716943

To sequence:

716758

Alignments:

                                                                                                                  NC
                              :::::::::::::::<<<<<<<<____>>>>>>>>,,,,,,,<<<---<<<<<<<<<----<~~~~~~>--->>>>>>>>>-> CS
               RF01808      1 AuAAuAAcuAgAaAAGgGCGACCguauGGUCGCcCuUuuuaUuaccauugcuauuACacauU*[14]*AUcAGUaauagcaag 91    
                              A A  AA UA+AAAAGGGCGA: G AU :UCGCCCUUU U UU::++ ::::AU::: C UU      A CA:::AU:::: :
  gi_545778205_gb_U000 716943 AAACAAAGUAAAAAAGGGCGAUUGAAUGAUCGCCCUUUCUGUUUGUUGGCAAAUAGUUCGUU*[47]*AGCAACUAUUUGCGU 716820
                              *********************************************************98886...9..6689*********** PP

                                                           NC
                              >>,,,,,,,~~~~~~~~~~~~::::::: CS
               RF01808     92 uauacUggc*[62]**[25]*UUUUUaU 194   
                              :AU+ U                UUUUAU
  gi_545778205_gb_U000 716819 AAUUAUA--*[19]**[29]*AUUUUAU 716758
                              **99875.....9.....9..9****** PP

RNAfold
>gi_545778205_gb_U000_139
GUAAUAAAAUGGCGAGGCCGGGCCGGAUCCUGUUCCAGUUUUUGUCGCAG
AUGCCCCAUAUAAUUACGCAAAUAGUUGCUGUGUUCGAUCGCGUUUAGAC
CCUACAUCUGCCGGAUGCGGCAUAAAUAACGAACUAUUUGCCAACAAACA
GAAAGGGCGAUCAUUCAAUCGCCCUUUUUUACUUUGUUUUAUU
(((((...((((...(((...((((((..(((...)))..))))..))....)))))))...)))))((((((((((((((((((((...(((...............))))))))))))))..........))))))))).((((((.((((((((((((......))))))))))))...))))))..... (-54.90)

Length sequence

: 193

Length match:

184