gi_545778205_gb_U000_143

cmsearch-Rfam

Family :

mir-282

Id:

RF00724

Type:

Gene; miRNA;

Taxonomy:

Eukaryota;

Ontology:

GO:0035068 micro-ribonucleoprotein complexRF00724

Description:

not description

Score:

31.5

E-value:

0.00055

From sequence:

1905254

To sequence:

1905337

Alignments:

                                              v          v                                          v          v NC
                               :::::<-------<<<<<<<<<<<--<<<<<<-<<<<<.<_________________>>>>>>->>>>>>-->>>>>>>>> CS
               RF00724       1 aauuaccuuaUuaAucuAgCCUcUcCuAGGCUUUGUCU.gUgcAuUugauaaaaaaucAGACAUAGCCUauaAgAGGuUag 80     
                                A+UA: UUAU AA: UA:CC      A GCU UGU U GUG+AUUU+  +AA+AAUCA ACAUAGC U      GG:UA 
  gi_545778205_gb_U000 1905254 CAAUAAGUUAUGAAUUUAGCC-----AAAGCUAUGUUUaGUGUAUUUU--UAAUAAUCAGACAUAGCUUA-----GGCUAU 1905322
                               ********************9.....9***********5566666554..55899999*********996.....9***** PP

                                               NC
                               >>------->::::: CS
               RF00724      81 gUguAaucugguuaa 95     
                               :U++  UCU:     
  gi_545778205_gb_U000 1905323 AUUACCUCUUCCCUU 1905337
                               *************** PP

>>

RNAfold
>gi_545778205_gb_U000_143
CAACUCAAUAAGUUAUGAAUUUAGCCAAAGCUAUGUUUAGUGUAUUUUUA
AUAAUCAGACAUAGCUUAGGCUAUAUUACCUCUUCCCUUAUUUGU
......((((((....((((.(((((.(((((((((((.(..((((...))))..)))))))))))).))))).))....))....))))))... (-23.30)

Length sequence

: 95

Length match:

82