gi_545778205_gb_U000_144

cmsearch-Rfam

Family :

mir-282

Id:

RF00724

Type:

Gene; miRNA;

Taxonomy:

Eukaryota;

Ontology:

GO:0035068 micro-ribonucleoprotein complexRF00724

Description:

not description

Score:

30.6

E-value:

0.00099

From sequence:

1905337

To sequence:

1905254

Alignments:

                                              v          v         v                     v         v          v  NC
                               :::::<-------<<<<<<<<<<<--<<<<<<-<<<<<<_________________>>>>>>->>>>>>-->>>>>>>>>> CS
               RF00724       1 aauuaccuuaUuaAucuAgCCUcUcCuAGGCUUUGUCUgUgcAuUugauaaaaaaucAGACAUAGCCUauaAgAGGuUagg 81     
                               AA   :+ +  UAA: UA:CC      A GCU UGU U  ++AUU +A+A +A A+ A ACAUAGC U      GG:UA :
  gi_545778205_gb_U000 1905337 AAGGGAAGAGGUAAUAUAGCC-----UAAGCUAUGUCUGAUUAUUAAAAA-UACACUAAACAUAGCUUU-----GGCUAAA 1905268
                               ********************9.....9****************9998887.77788999********98.....9****** PP

                                              NC
                               >------->::::: CS
               RF00724      82 UguAaucugguuaa 95     
                               U+ A  + : +U  
  gi_545778205_gb_U000 1905267 UUCAUAACUUAUUG 1905254
                               ************** PP

RNAfold
>gi_545778205_gb_U000_144
CAACUCAAUAAGUUAUGAAUUUAGCCAAAGCUAUGUUUAGUGUAUUUUUA
AUAAUCAGACAUAGCUUAGGCUAUAUUACCUCUUCCCUUAUUUGU
......((((((....((((.(((((.(((((((((((.(..((((...))))..)))))))))))).))))).))....))....))))))... (-23.30)

Length sequence

: 95

Length match:

82