gi_545778205_gb_U000_148

cmsearch-Rfam

Family :

mir-674

Id:

RF00914

Type:

Gene; miRNA;

Taxonomy:

Eukaryota;

Ontology:

GO:0035068 micro-ribonucleoprotein complexRF00914

Description:

not description

Score:

27.2

E-value:

0.0025

From sequence:

3239586

To sequence:

3239710

Alignments:

                                                   v      vv          v                          v          vv   NC
                               ::::::::::::::<<<<<<<<<<<--<<<<<<<<<<<<<<<<<<<--<<_~~~~~~>>->>>>>>>>>>>>>>>>>>>.- CS
               RF00914       1 GGccUAGUcaUcAcCCcGaGCCuuGcACuGaGauGGGaGcgGuGcaAGgCU*[ 3]*GcAugCaCcgCuCCCauCuCaG.A 77     
                                GC   GU  UC CCC:::: C  :CA  G:GA::GG::  G:G::AGG:U      :C ::C:C  ::CC::UC:C + A
  gi_545778205_gb_U000 3239586 AGCACCGUUUUCUCCCUCUCCCUUCCA--GGGAGAGGGUCGGGGUGAGGGU*[29]*CCUCACCCUAACCCUCUCCCCAaA 3239687
                               *************************99..7788888888888888888877...9..777888888888888887775525 PP

                                    v                  NC
                               ->>>>>>>>>>>::::::::::: CS
               RF00914      78 ACaaGGCuCgGGUGUGcacAGcU 100    
                                :  G ::::GG  UG  C   U
  gi_545778205_gb_U000 3239688 CGGGGCGAGGGGACUGACCGAGU 3239710
                               5888889**************** PP

RNAfold
>gi_545778205_gb_U000_148
GCACCGUUUUCUCCCUCUCCCUUCCAGGGAGAGGGUCGGGGUGAGGGUAA
UUUUUCGCACCGAUGCUGGCCUGUUCCCCUCACCCUAACCCUCUCCCCAA
ACGGGGCGAGGGGACUGACCGAGU
...(.(((.((.(((((.((((....((((((((((.((((((((((.(((...(((((....))).))...))).)))))))))).)))))))))).....)))).)))))))..))).)... (-64.50)

Length sequence

: 124

Length match:

123