gi_545778205_gb_U000_150

cmsearch-Rfam

Family :

MOCO_RNA_motif

Id:

RF01055

Type:

Cis-reg; riboswitch;

Taxonomy:

Eukaryota; Bacteria;

Ontology:

GO:0048037 cofactor binding

Description:

not description

Score:

97.8

E-value:

3.6e-25

From sequence:

816912

To sequence:

817056

Alignments:

                                                     vv                           vv        v                  v  NC
                              ::((-(----(((((.(,,<<<<<<<<<<<---<<<<____>>>>-->>>>>>>>>>>,<<<<<___...........__>>> CS
               RF01055      1 auucacauaaaaCuC.CgAGCcuaaccacCUAAgucgaaagcgauAuGgugguuagGCCguggcuau...........uagcc 71    
                              AU:: CA++A:AC:C C AGCC:  :CACCU  GUC AA + GAUA GGUG:  :GGCCGUG C+AU           U+G C
  gi_545778205_gb_U000 816912 AUAACCACUAAACACuCUAGCCUCUGCACCUGGGUC-AACU-GAUACGGUGCUUUGGCCGUGACAAUgcucguaaagaUUGCC 816992
                              ************************************.5666.************************************9**** PP

                                          vv      vv                                           NC
                              >>,,<<<<<<<<<<<____>>>>>>>>>>><<_______>>,,,))))))----)-)):::::: CS
               RF01055     72 accAGGGcgaaguugGAAAcaacuucgCCUCCCGUaUUUGGAAAGGaGuuuaaggagaaauaaa 135   
                              ACCAGGGCGAAG  :GAAA:  CUUCGCCUCCCGUAU UGGAAAGG:GU:+A+GG :: A AA 
  gi_545778205_gb_U000 816993 ACCAGGGCGAAGGAAGAAAUGACUUCGCCUCCCGUAUCUGGAAAGGUGUACAUGGCUUCACAAC 817056
                              **************************************************************** PP

RNAfold
>gi_545778205_gb_U000_150
UAACCACUAAACACUCUAGCCUCUGCACCUGGGUCAACUGAUACGGUGCU
UUGGCCGUGACAAUGCUCGUAAAGAUUGCCACCAGGGCGAAGGAAGAAAU
GACUUCGCCUCCCGUAUCUGGAAAGGUGUACAUGGCUUCACAAC
.................((((..(((((((...(((...(((((((.((....)).(((.((((.((.....)))))).)))..((((((((..(....)..)))))))).))))))))))..)))))))...))))....... (-42.20)

Length sequence

: 144

Length match:

143