gi_545778205_gb_U000_156

cmsearch-Rfam

Family :

ohsC_RNA

Id:

RF02495

Type:

Gene; antitoxin;

Taxonomy:

Bacteria;

Ontology:

GO:0003729 mRNA binding

Description:

not description

Score:

37.1

E-value:

0.00079

From sequence:

2700622

To sequence:

2700554

Alignments:

                                       v         v                                                           NC
                               :<<<<--<<<<<___>>>>>---->>>>------<<<<<<<<<<<<<<<_____________>>>>>>>>>>>>>>> CS
               RF02495       1 GUUgaaaguGcgUGCcgCacAAAAuuAAAGUUauAAAGuAAAAcCCCCGUUCCUUACCAGUUCGGGGgUUUUaCUUU 77     
                               GUU:AAA: ::   C :: :    U:AA      AAAGUAAAACCCCCG  C       G  CGGGGGUUUUACUUU
  gi_545778205_gb_U000 2700622 GUUAAAAAUAAUACCGUUCU--CUUUAA------AAAGUAAAACCCCCGAACUGGUAAGGAACGGGGGUUUUACUUU 2700554
                               *****985555555555555..569999......***************9887766666666*************** PP

RNAfold
>gi_545778205_gb_U000_156
UAAAAAGUAAAACCCCCGUUCCUUACCAGUUCGGGGGUUUUACUUUUUAA
AGAGAACGGUAUUAUUUUUAACUUUC
((((((((((((((((((..(.......)..))))))))))))))))))........................... (-26.70)

Length sequence

: 76

Length match:

67